Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq140 194 3e-45 seq143 159 5e-35 seq282 156 7e-34 seq272 141 1e-29 seq5 96.9 5e-16 >seq140 Length=4340978 Score = 194 bits (214), Expect = 3e-45 Identities = 191/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||| || | | | || || |||||||| || ||||||||||| || | Sbjct 3308640 CGCTAAGCGTCATCGTAAGGTGT-TGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3308698 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3308699 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3308758 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| ||| || || ||| |||| Sbjct 3308759 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCTCCTACACCG 3308818 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | ||||| || ||||||| || | Sbjct 3308819 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGG 3308878 Query 16671 GCCG 16674 |||| Sbjct 3308879 GCCG 3308882 Score = 194 bits (214), Expect = 3e-45 Identities = 191/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| || | | | || || |||||||| || ||||||||||| || | Sbjct 3759175 CGCCAAGCGTCATCGTAAGGTGT-TGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3759233 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3759234 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3759293 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3759294 CCCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3759353 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || |||| Sbjct 3759354 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCTCTGAAGCGCCAAG 3759413 Query 16671 GCCG 16674 |||| Sbjct 3759414 GCCG 3759417 Score = 190 bits (210), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || |||||||| || ||||||||||| || | Sbjct 3189186 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3189244 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3189245 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3189304 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3189305 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3189364 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | ||||| || ||||||| || | Sbjct 3189365 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGG 3189424 Query 16671 GCCG 16674 |||| Sbjct 3189425 GCCG 3189428 Score = 190 bits (210), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || |||||||| || ||||||||||| || | Sbjct 3418317 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3418259 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3418258 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3418199 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3418198 CCCGTGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3418139 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | ||||| || |||| || || | Sbjct 3418138 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAGCGCCAGG 3418079 Query 16671 GCCG 16674 |||| Sbjct 3418078 GCCG 3418075 Score = 190 bits (210), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || |||||||| || ||||||||||| || | Sbjct 3545129 CGCCAAGCGTCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3545187 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3545188 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTTATCTACGAGGAGA 3545247 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| ||||||| || ||| |||| Sbjct 3545248 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCTGTCACCTACACCG 3545307 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 3545308 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 3545367 Query 16671 GCCG 16674 |||| Sbjct 3545368 GCCG 3545371 Score = 190 bits (210), Expect = 3e-44 Identities = 190/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||| | | | || || || |||||||| || ||||| ||||| || | Sbjct 3893558 CGCTAAGCGTCATCGTA-AGGTGTTGCGTGACAACATCCAGGGCATCACTAAGCCCGCCA 3893500 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3893499 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3893440 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3893439 CCCGTGGCGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3893380 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 3893379 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 3893320 Query 16671 GCCG 16674 |||| Sbjct 3893319 GCCG 3893316 Score = 185 bits (204), Expect = 1e-42 Identities = 189/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || |||||||| || ||||||||||| || | Sbjct 3276655 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3276597 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||||||||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3276596 TCCGTCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3276537 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3276536 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3276477 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||||| || ||||| |||||| ||||||| | ||||| || |||| || || | Sbjct 3276476 AGCACGCTAAGCGCAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTGAAGCGCCAGG 3276417 Query 16671 GCCG 16674 |||| Sbjct 3276416 GCCG 3276413 Score = 185 bits (204), Expect = 1e-42 Identities = 189/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || | | | || || |||||||| || ||||||||||| || | Sbjct 3737030 CGCCAAGCGTCATCGCAAGGTGT-TGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 3737088 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||| |||| || |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 3737089 TTCGTCGTTTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAGGAGA 3737148 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 3737149 CCCGTGGCGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCG 3737208 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | ||||| || |||| || || | Sbjct 3737209 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAGCGCCAGG 3737268 Query 16671 GCCG 16674 |||| Sbjct 3737269 GCCG 3737272 >seq143 Length=2170080 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | |||||| || |||||||| || ||||||||||| || || Sbjct 523584 CGCCAAGCGTCACCGTAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 523643 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 523644 CCGTCGTCTGGCTCGCCGTGGCGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 523703 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| | | ||| || | ||| || | || ||||| Sbjct 523704 CCGAGGCGTTCTCAAGGTCTTCCTGGAAAACGTCATACGTGACGCCGTGACGTACACCGA 523763 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||| |||||| ||||||| | ||||| || | ||||| || || Sbjct 523764 ACACGCCAAACGCAAGACGGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGCCAGGG 523823 Query 16672 CCG 16674 ||| Sbjct 523824 CCG 523826 >seq282 Length=304269 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||||| || |||||||| || ||||||||||| || || Sbjct 276927 CGCCAAGCGTCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 276868 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 276867 CCGTCGCCTGGCTCGCCGAGGCGGCGTTAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 276808 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| ||||||| ||| ||| |||| || || | ||| ||||| Sbjct 276807 CCGAGGTGTTCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCAGTGACCTACACCGA 276748 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| || || || | ||||| ||||| Sbjct 276747 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGGTGTGTACGCTCTCAAACGCCAAGG 276688 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 276687 CCGCACCCTCTACGGCTTTGG 276667 >seq272 Length=475305 Score = 141 bits (156), Expect = 1e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 16456 TCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGG 16515 ||| || |||||||| || ||||||||||| || ||||||||||||||||| ||||| || Sbjct 39377 TCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCTCGCCGTGGCGG 39318 Query 16516 AGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||||| |||| || | |||| || |||| || | ||| | || ||||||| Sbjct 39317 CGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGAGGCGTTCTCAAAGTCTTCCT 39258 Query 16576 CAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| ||| |||| || || | ||| |||||||| || || || ||||| ||||| Sbjct 39257 GGAGAACGTGATCCGCGACGCAGTGACCTACACCGAGCATGCCAAGCGCAAGACCGTCAC 39198 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 | || |||| | ||||| || || ||||| |||| Sbjct 39197 CGCCCTGGACGTTGTCTACGCTTTCAAACGCGAAGG 39162 >seq5 Length=1022208 Score = 96.9 bits (106), Expect = 5e-16 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||| || ||||||||||| || ||||||||||| || || Sbjct 965235 CGCCAAGCGTCACCGCAAGGTTCTACGTGATAACATCCAGGGCATCACCAAGCCCGCCAT 965176 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || || || || |||||| | ||||||| | | || || |||| Sbjct 965175 CCGTCGTCTGGCCCGCCGAGGAGGCGTCAAGAGAATCTCTGGGCTCATTTACGAGGAGAC 965116 Query 16552 TCGTGATGTTTTGAAG 16567 || | ||| ||||| Sbjct 965115 CCGCGGCGTTCTGAAG 965100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074836105814