Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq201 93.3 1e-13 seq209 89.7 1e-12 seq82 89.7 1e-12 >seq201 Length=905327 Score = 93.3 bits (102), Expect = 1e-13 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| || || ||||| ||||| | ||||| || ||||| || || ||||| | Sbjct 243964 AGCGCCCTGGTGCCTTTGCCATGTACTTGGAGCCATGGCACGCCGACATCTTCGAGTTCC 244023 Query 363890 TTGA-GCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCA 363948 | || |||| | || |||||||| || ||||| ||| |||||||| |||||||| || Sbjct 244024 TGGATGCTC-GCAAGAACACGGGTAAGGAGGAGCAGCGCGCACGTGACCTGTTCTACGCC 244082 Query 363949 CTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 | ||| | |||||| || |||||||||||||| Sbjct 244083 ATGTGGATCCCTGACCTGTTCATGAAGCGCGTGGA 244117 >seq209 Length=3175921 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT--GA-ACAATGAACGTTCATTCGCGGAACGT 22494 || ||||| || ||||| || || |||| || || | || || | || | ||| ||| Sbjct 1714352 AAGAAGGCTGACTGGGCCCTAAAGTGGACCGGAGACGAGAAAAGTACTTTTGGGGATCGT 1714293 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 | |||| ||||| | || ||||| || || || ||||| || || ||||||||| Sbjct 1714292 GTAGTTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCTGGGGCCTTCGCAGCAATCTTT 1714233 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||| | | || | | | ||||| || || || || ||||||||| | || || || Sbjct 1714232 TGGTTGAGGAAGAGAGGGCTCATGCCCGGGCTGACTTTCTCAAATGAGCTGATCAGTAGA 1714173 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 || |||||||| || ||||| ||||| ||| || Sbjct 1714172 GACGAGGGTCTGCACACCGACTTTGCCTGTCTG 1714140 >seq82 Length=929508 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT--GA-ACAATGAACGTTCATTCGCGGAACGT 22494 || ||||| || ||||| || || |||| || || | || || | || | ||| ||| Sbjct 23685 AAGAAGGCTGACTGGGCCCTAAAGTGGACCGGAGACGAGAAAAGTACTTTTGGGGATCGT 23626 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 | |||| ||||| | || ||||| || || || ||||| || || ||||||||| Sbjct 23625 GTAGTTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCTGGGGCCTTCGCAGCAATCTTT 23566 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||| | | || | | | ||||| || || || || ||||||||| | || || || Sbjct 23565 TGGTTGAGGAAGAGAGGGCTCATGCCCGGGCTGACTTTCTCAAATGAGCTGATCAGTAGA 23506 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 || |||||||| || ||||| ||||| ||| || Sbjct 23505 GACGAGGGTCTGCACACCGACTTTGCCTGTCTG 23473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346953711236