Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq116 98.7 8e-16 seq30 96.9 3e-15 >seq116 Length=4760417 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| ||||| || ||||||||||||| | Sbjct 3279202 CCACCACGCAGACGCAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3279143 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || ||||| ||| | || || ||||| ||||| || Sbjct 3279142 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 3279083 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| || ||| Sbjct 3279082 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTTTCAATGGTGTCTGATGGTTCCA 3279025 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | ||||||||| || || ||||| || || || || ||||||||| Sbjct 3279024 CTTCAAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATT 3278975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||||| | Sbjct 3276566 CCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3276507 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || ||||| || | || || ||||| ||||| || Sbjct 3276506 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276447 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| |||||| Sbjct 3276446 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTTTCAATGGTGTCTGATGGCTCCA 3276389 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || ||||| || || || || |||||||| Sbjct 3276388 CTTCAAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||||||||| || ||||||||||||| | Sbjct 3276110 CCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3276051 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || | || || ||||| ||||| || Sbjct 3276050 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 3275991 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| ||||| Sbjct 3275990 ATGCCCTCCTTGTCTTGGATCTTAGC--CTTGACGTTCTCAATGGTGTCAGACGGCTCAA 3275933 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || || || || || ||||| |||||||| || Sbjct 3275932 CCTCAAGGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAGATCTGCATCTT 3275881 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||||| | Sbjct 3276338 CCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3276279 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| || | || || ||||| ||||| || Sbjct 3276278 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276219 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| |||||| Sbjct 3276218 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCTGATGGCTCCA 3276161 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 3276160 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276112 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||||| | Sbjct 3276794 CCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3276735 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || ||||| || | || || ||||| ||||| || Sbjct 3276734 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276675 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| ||||| Sbjct 3276674 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCTGATGGCTCAA 3276617 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 3276616 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||||||||| || ||||||||||||| | Sbjct 3277022 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3276963 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || | || || ||||| ||||| || Sbjct 3276962 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276903 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| ||||| Sbjct 3276902 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGATGGCTCAA 3276845 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || ||||| || || || || |||||||| Sbjct 3276844 CCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||| ||||| || ||||||||||||| | Sbjct 3277250 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3277191 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || | || || ||||| ||||| || Sbjct 3277190 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 3277131 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| ||||| Sbjct 3277130 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCAGATGGCTCAA 3277073 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 3277072 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3277024 >seq30 Length=7729275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | | Sbjct 7573221 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573280 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || || ||||| ||||| || Sbjct 7573281 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573340 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| |||||| Sbjct 7573341 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTTTCAATGGTGTCTGATGGCTCCA 7573398 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || || || || || ||||| |||||||| Sbjct 7573399 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573447 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | | Sbjct 7573449 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573508 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || || ||||| ||||| || Sbjct 7573509 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573568 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | |||||| ||||| Sbjct 7573569 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTCTCGATTGTGTCGGATGGCTCAA 7573626 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 7573627 CCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 7573675 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || ||||||||||| || ||||||||||| | | Sbjct 7571853 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7571912 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| || | || || ||||| ||||| || Sbjct 7571913 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7571972 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| |||||| Sbjct 7571973 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTTTCAATGGTGTCTGATGGCTCCA 7572030 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || || || || || ||||| |||||||| Sbjct 7572031 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7572079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || |||||||| || || ||||||||||| | | Sbjct 7572537 CCACCACGCAGACGCAGGACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572596 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || || ||||| ||||| || Sbjct 7572597 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7572656 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | |||||| ||||| Sbjct 7572657 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTTTCGATTGTGTCGGATGGCTCAA 7572714 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 7572715 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 7572763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || |||||||| || || ||||||||||| | | Sbjct 7572309 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572368 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| || | || || ||||| ||||| || Sbjct 7572369 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572428 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| ||||| Sbjct 7572429 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTTTCAATGGTGTCTGATGGCTCAA 7572486 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| |||||||| || |||||||| Sbjct 7572487 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||| |||||| || ||||||||||| | | Sbjct 7572993 CCACCACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 7573052 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || || ||||| ||||| || Sbjct 7573053 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573112 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| |||||| Sbjct 7573113 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACGTTTTCAATGGTGTCTGATGGCTCCA 7573170 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || || || || || ||||| |||||||| Sbjct 7573171 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086035070020