Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq282 140 2e-28 seq199 140 2e-28 seq108 140 2e-28 seq68 140 2e-28 seq126 116 2e-21 seq42 116 2e-21 seq97 91.5 1e-13 seq30 91.5 1e-13 >seq282 Length=304269 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 26135 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 26194 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 26195 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 26229 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 28970 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 29029 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 29030 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 29064 >seq199 Length=1763339 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 941327 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 941386 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 941387 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 941421 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 943764 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 943823 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 943824 GTCCGTATTTAGCCTTA 943840 >seq108 Length=2664055 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1260822 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1260763 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1260762 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1260728 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258383 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1258324 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1258323 GTCCGTATTTAGCCTTA 1258307 >seq68 Length=339116 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 89532 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 89473 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 89472 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 89438 >seq126 Length=2685315 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1579004 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1579063 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1579064 GTCCGTATTTAGCCTTA 1579080 >seq42 Length=7062306 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7059585 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 7059644 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 7059645 GTCCGTATTTAGCCTTA 7059661 >seq97 Length=2734008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 5/68 (7%) Strand=Plus/Minus Query 25929 CTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTA 25983 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 2614477 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 2614418 Query 25984 GATGACGA 25991 |||||||| Sbjct 2614417 GATGACGA 2614410 >seq30 Length=7729275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || || ||||||||||| || || ||||| |||||| Sbjct 7572993 CCACCACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 7573052 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || || || || || || | |||| Sbjct 7573053 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573112 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||| || || | | || ||| || ||| Sbjct 7573113 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACT 7573172 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || || || || || | ||| ||||| || ||||||||| Sbjct 7573173 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945575296738