Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq30 122 8e-23 >seq30 Length=7729275 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| ||||| ||||||| |||| || ||| | || Sbjct 7573675 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCATCC 7573616 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 7573615 GACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7573556 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 7573555 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7573496 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| ||||| Sbjct 7573495 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 7573464 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||||||| | || Sbjct 7573447 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCA 7573388 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| || || || ||||| Sbjct 7573387 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7573328 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 7573327 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7573268 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| ||||| Sbjct 7573267 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 7573236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||||||| | || Sbjct 7573219 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCA 7573160 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| || || || ||||| Sbjct 7573159 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7573100 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 7573099 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7573040 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || || || || || Sbjct 7573039 ATCCAGAAGGAGAGCACCCTCCACTTGGTTCT 7573008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325898088370