Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq21 98.7 2e-15 seq132 96.9 7e-15 seq18 96.9 7e-15 seq37 91.5 3e-13 seq153 87.8 4e-12 seq190 86.0 1e-11 >seq21 Length=10574652 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 4944449 AGAAAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTT 4944390 Query 142559 CGAGCCCCACATCGGGC 142575 ||||||||||||||||| Sbjct 4944389 CGAGCCCCACATCGGGC 4944373 >seq132 Length=2746521 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1417396 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 1417455 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 1417456 CCCCACATCGGGC 1417468 >seq18 Length=3791390 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 3122709 GAAAGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTC 3122650 Query 142560 GAGCCCCACATCGGGC 142575 |||||||||||||||| Sbjct 3122649 GAGCCCCACATCGGGC 3122634 >seq37 Length=6811162 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 683193 ATCGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCG 683252 Query 142561 AGCCCCACATCGGGC 142575 |||||||||| |||| Sbjct 683253 AGCCCCACATTGGGC 683267 >seq153 Length=7063230 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1283867 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGA 1283808 Query 142562 GCCCCACATCGGGCAGAAGT 142581 ||||||| | |||| ||||| Sbjct 1283807 GCCCCACGTTGGGC-GAAGT 1283789 >seq190 Length=2832246 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2718298 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 2718239 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| ||||| Sbjct 2718238 CCCCACGTTGGGC-GAAGT 2718221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831558674718