Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq263 96.9 3e-15 >seq263 Length=525514 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 ||||||| || | || || | ||| ||||| | ||| || |||||||| ||||| || | Sbjct 160632 TAAGACCTGTGATGTGGGCTATCATGTAAGTCAGGAGTGAGTAGCTGGCGATGTTGAAGG 160691 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || || | ||| |||||||||| | ||| ||||||||||| || || || |||| | Sbjct 160692 GTACGCCAAGCCCCGTGTCTCCCGAACGCTGGTACAGCTGACACGACAGTTCTCCGTTAC 160751 Query 20355 CTACATA-AAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 || || || | |||| || ||| ||||| || ||||||||| Sbjct 160752 ACACGTAGAACTGGACA-AAGGCGTGGCAGGGGGGCAGCGCCATC 160795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 || ||||| |||||||||||||| || || ||||| || | ||||||||| ||| Sbjct 162829 GCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCCTCCTCGTAGTGG 162888 Query 20594 GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCT 20653 ||| || ||| | ||||||| || |||||||| || ||||| || | || | | Sbjct 162889 CTCAGTCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCAGATGTGTAC-CTT 162947 Query 20654 GTTCT-TGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCAC 20712 || | || || ||| || | |||| ||| | |||||| | ||||| | | Sbjct 162948 TTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAAGAGCTCCTCGGC 163007 Query 20713 TACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTG 20757 ||| |||| ||| ||||| |||||||| || || | ||| || || Sbjct 163008 TACCCCTCTCCAGAACACACGCTTTGTAGTCAGCAGGGGGAACTG 163052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441370604170320