Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq183 87.8 4e-12 seq99 87.8 4e-12 seq259 86.0 1e-11 seq82 84.2 5e-11 >seq183 Length=676410 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || ||||||||||| | || || ||| | ||||| |||||||| || ||| | || ||| Sbjct 151379 TTGCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 151438 Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 || || ||||||||| | ||| | | ||| | || | ||| |||| || |||| Sbjct 151439 ACAACAGAGGAAGTTGACATCTCTAAG--GACTTGGTGCATTGG---GAGAGTCTGAATG 151493 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 || ||||| || |||||||||||| | || | || || |||| |||||||| | Sbjct 151494 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGATGGTATCG 151553 Query 243053 TGATGGAAAATCT-GCAGA 243070 | | || ||||| ||||| Sbjct 151554 TCAATGAGAATCTGGCAGA 151572 >seq99 Length=2803933 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || ||||||||||| | || || ||| | ||||| |||||||| || ||| | || ||| Sbjct 2309010 TTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 2309069 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || || ||||||||| ||| |||| | | | ||| |||| ||| |||||| Sbjct 2309070 ACAACGGAGGAAGTTGATCTCTCTAAAGACTTGGCGCATTGG---GAGAGACTGAATGAC 2309126 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| || |||||||||||| | || | || || |||| || ||||| || Sbjct 2309127 AACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATAGTC 2309186 Query 243055 ATGGAAAATCTG 243066 | ||||||||| Sbjct 2309187 AATGAAAATCTG 2309198 >seq259 Length=546029 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || ||||||||||| | || || ||| | ||||| |||||||| || ||| | || ||| Sbjct 378352 TTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 378293 Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 || || ||||||||| |||| | | ||| | | | ||| |||| ||| |||| Sbjct 378292 ACAACGGAGGAAGTTGATCTCTCTAAG--GACTTGGCGCATTGG---GAGAGACTGAATG 378238 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 || ||||| || |||||||||||| | || | || || |||| || ||||| | Sbjct 378237 ACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATAG 378178 Query 243053 TGATGGAAAATCTG 243066 | | ||||||||| Sbjct 378177 TCAATGAAAATCTG 378164 >seq82 Length=929508 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || ||||||||||| | || || ||| | ||||| |||||||| || ||| | || ||| Sbjct 24051 TTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 23992 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || || ||||||||| ||| | ||| | | | ||| |||| || |||||| Sbjct 23991 ACAACGGAGGAAGTTGATCTCTCCAAGGACTTGGAGCATTGG---GAGAGTCTGAATGAC 23935 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| || |||||||||||| | || | || || |||| || ||||| || Sbjct 23934 AACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCGTC 23875 Query 243055 ATGGAAAATCTG 243066 | ||||||||| Sbjct 23874 AATGAAAATCTG 23863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874376001300