Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq183 100 3e-16 seq99 100 3e-16 seq259 93.3 5e-14 seq201 93.3 5e-14 seq154 87.8 2e-12 seq212 86.0 7e-12 >seq183 Length=676410 Score = 100 bits (110), Expect = 3e-16 Identities = 298/451 (66%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || |||| |||||| |||||||| ||||| || |||| || |||||||| Sbjct 152239 GTACTCTCCCACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCAT 152180 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 |||||||| ||||||| ||| ||| || || ||| | | | | | || || Sbjct 152179 GAAATCAAAGGGGTTCTCGCTGTTGTAAAGCTTACTG-CACACGAGT-TCTCCCAGCAGC 152122 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT- 125934 | || | ||| |||| ||||||| |||| || ||||| || || | || Sbjct 152121 CTGTCTGCGACAAACTCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAACTTC 152062 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 ||| || || || ||| | |||| | | |||||| | || || || | || Sbjct 152061 ACA-GGAAGAGCTTCCGTTAGGAACTCTTGCTCAATCTTAACAGCATCGTCGATAATCTG 152003 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAACT 126053 ||||||| ||| | ||| ||||| || ||| | | || |||||| | Sbjct 152002 GTGAATGAGCTCCTGACTAGGCTTATTGATCAGGTAGCTGACCA-TAAGACAGGCAAAGT 151944 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| ||||||||||| | ||| || ||||| ||||| ||| || ||||||| Sbjct 151943 CGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCCGGGCATGA 151884 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || | |||| ||||||||||||| || || | || ||||| ||||| || |||| Sbjct 151883 GTCCTCTCTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAAGATCCCTTCCA 151824 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 || || ||||||| | |||||| |||| Sbjct 151823 CAGCGGCAAACGCAACCACACGCTCCCCAAA 151793 >seq99 Length=2803933 Score = 100 bits (110), Expect = 3e-16 Identities = 299/451 (66%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| |||||| |||||||| ||||| || |||| || |||||||| Sbjct 2309870 GTACTCTCCCACCTTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCAT 2309811 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 || ||||| ||||||| ||| |||| | |||| | | | | || || | Sbjct 2309810 GAAGTCAAAGGGGTTCTCGCTGTTGTAAATCTTACTGCACATGAGT-TCTCCCAGCAGCC 2309752 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 125935 ||| | ||| |||||||||||| |||| || ||||| || || || || | Sbjct 2309751 TATCTGCGACAAACTCAATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCA 2309692 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGC-TTCCCGCACGATGGC 125994 || || ||||| ||| | |||| | | |||||| | || || || || | || Sbjct 2309691 CA-GGAAGCGCTTCCGTCAGGAACTCTTGCTCAATCTTAACAGCATTGTCG-ATAATCTG 2309634 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAACT 126053 ||||||| ||| | | ||| ||||| || ||| | | || |||||| | Sbjct 2309633 GTGAATGCGCTCCTCACTAGGCTTATTGACCAGGTAGCTGACCA-TAAGACAGGCAAAGT 2309575 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| ||||||||||| | ||| || ||||| ||||| || || ||||||| Sbjct 2309574 CGGTGTGTAGACCCTCGTCTCTACTGATCAGCTCATTGGAGAAAGTTAGCCCCGGCATGA 2309515 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || | ||| | ||||||||||| || || | |||||||| ||||| || |||| Sbjct 2309514 GTCCTCTTTTCCTTAACCAGAAAATTGCTGCGAAGGCCCCCGAGAAAAAGATCCCTTCCA 2309455 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 || || ||||||| | |||||| |||| Sbjct 2309454 CAGCGGCAAACGCAACTACACGCTCGCCAAA 2309424 >seq259 Length=546029 Score = 93.3 bits (102), Expect = 5e-14 Identities = 298/454 (66%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| |||| |||||| |||||||| ||||| || |||| || |||||||| Sbjct 365087 GTACTCCCCCACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCAT 365146 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTG---AGG 125872 || ||||| ||||||| ||| ||| || || ||| || ||| || Sbjct 365147 GAAGTCAAAGGGGTTCTCGCTGTTGTAAAGCTTACTG-CAC----ATGAGTTCCCCCAGC 365201 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 || | ||| | ||| |||| ||||||| |||| || ||||| || || || Sbjct 365202 AGCCTATCTGCGACAAACTCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAGC 365261 Query 125933 TTACATGGGA-GCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || |||| | || ||| | |||| | |||||| | || || || | || Sbjct 365262 CT-CACGGGAAGAGCTTCCGTCAGGAACTTTTGCTCAATCTTAACAGCATCGTCAATAAT 365320 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAA 126050 ||||||| ||| | | ||| ||||| || | ||| | | || ||||| Sbjct 365321 CTGGTGAATGCGCTCCTCACTAGGCTTATTGATCAGATAGCTGACCA-TAAGACAGGCAA 365379 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| ||||||||||| | ||| || ||||| ||||| ||| ||||||| Sbjct 365380 AGTCGGCGTGCAGACCCTCGTCTCTACTGATCAGCTCATTGGAGAAAGTCAGCCCTGGCA 365439 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||| || | ||| ||||||||||||| || || | || ||||| || || || | Sbjct 365440 TGAGTCCTCTTTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAATATCCCTT 365499 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| || ||||||| | ||| || |||| Sbjct 365500 CCACAGCGGCAAACGCAACCACACGATCCCCAAA 365533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| ||||||||||| | ||| || ||||| ||||| || || Sbjct 377780 GGCAAAGTCGGTGTGTAGACCCTCGTCTCTACTGATCAGCTCATTGGAGAAAGTTAGCCC 377839 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || | ||| | ||||||||||| || || | |||||||| ||||| Sbjct 377840 CGGCATGAGTCCTCTTTTCCTTAACCAGAAAATTGCTGCGAAGGCCCCCGAGAAAAAGAT 377899 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 || |||||| || ||||||| | |||||| Sbjct 377900 CCCTTCCACAGCGGCAAACGCAACTACACGCTC 377932 >seq201 Length=905327 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| || || |||||| Sbjct 248366 TAGATGTTGCTGGTGTAAGCCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAG 248307 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 |||||||||||||| |||| || |||||||| |||| ||| Sbjct 248306 GCTGTGGGCATGGGGGCCAACAGCAGGCTGTTCCGGACACC 248266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 |||||||| | ||| || || || | || | ||| |||||||| | ||||| ||| Sbjct 244814 GTGTACTCCACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCGAGGTTCTGTTGG 244755 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||| |||| || ||||||||||| |||||||| || | || |||||||| ||| Sbjct 244754 TTAGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGGTTTCCTGTCTCCGTCTGG 244695 Query 114632 GACTTGAGAATAGCCTTCCAGAC 114654 | || || ||||| | ||| || Sbjct 244694 GCCTCGATGATAGCATACCACAC 244672 >seq154 Length=781518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||||||||| ||| | ||||||||||| || ||||| || |||||| ||| || Sbjct 50135 GGCAAACTCGCAGTGCAAGCCCTCGTCACGACTAATTAGTTCGTTAGAGAAGGTCAGGCC 50076 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| || || || ||||||| |||||| || ||| || || || |||||||| | Sbjct 50075 GGGCATCAGGCCGCGTTTCTTCAGCCAGAAGATGGCAGCGAACGAGCCTGAGAAGAACAC 50016 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 |||||||| ||||| || | || ||||| Sbjct 50015 GCCCTCCACGGCTGCGAAGGCGACCAGCCGCTC 49983 >seq212 Length=1951279 Score = 86.0 bits (94), Expect = 7e-12 Identities = 338/523 (65%), Gaps = 14/523 (3%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| ||||||||||| | ||| || ||||| ||||| ||| || Sbjct 1645459 GGCAAAGTCGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTAGAGAAAGTCAGCCC 1645400 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||| || || | ||| ||||||||||||| || ||| | || ||||| || || Sbjct 1645399 TGGCATAAGTCCTCTTTTCCTCAACCAGAAAATTGCTGCAAAGGCCCCGGAGAAAAATAT 1645340 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGT-CAA 126224 || |||||| || ||||||| | ||| || |||| | || | | || | | Sbjct 1645339 CCCTTCCACAGCAGCAAACGCAACAACACGATCCCCAAAAGTGCTTTTC-TCGTCTCCGG 1645281 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 |||||| | ||||| | || || |||| | ||| || | ||||| ||||| | Sbjct 1645280 TCCACTTTAGGGCCCAGTCAGCTTTCTTCTTTACACAAGGTATGGTCTCAATCGCACTGA 1645221 Query 126285 AGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATC---TATGAGTTTTGAATAT 126340 | || | || ||||| || ||||| || | ||| | || || ||| | || Sbjct 1645220 ACAGATGCTCTCTTTCATG-CGGATCCTTCACGTAGGTGTCGATTAAGAGGCT---GTAC 1645165 Query 126341 GTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGC 126398 |||| |||| | ||| |||||| ||| | | ||||| | | | | || Sbjct 1645164 ATTTCAGAATGGATGTTCTCA--ATGGCAATCTGGAAGCCATAGAAGCACCTCACCTCAG 1645107 Query 126399 TTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACC 126458 | ||| ||||| | || || | | | ||| ||| || ||||| || Sbjct 1645106 GCACCTGCACCTCTTTGGTGAATCTCTCTACCAGATTTTCATTCACGATTCCGTCACTAG 1645047 Query 126459 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCC 126518 | ||||| || ||||||| | || ||||| | | ||| || || ||||| ||| || Sbjct 1645046 CTGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTTTTTCGTTGTCATTCAGACTCTCCC 1644987 Query 126519 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | | || | |||||| |||||||| || ||||||| ||||| Sbjct 1644986 AATGCTCCAAATCCTTAGAGAGATCAACTTCCTCCGTTGTCCA 1644944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350628165840