Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6 181 1e-40 seq75 113 6e-20 seq115 105 8e-18 >seq6 Length=9188263 Score = 181 bits (200), Expect = 1e-40 Identities = 521/787 (66%), Gaps = 17/787 (2%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||| || || || || | || ||||| || || ||||| || ||||| || | || || Sbjct 7429701 GATAGCTGCCTGCACGGCTGCTCCGTACGCCACGGCCTCGTCAGGGTTGATGGACTTGTT 7429760 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 ||||||||| ||||| || |||| | | | || || || || || || || || Sbjct 7429761 CAGTTCTTTGCCGTTGAAGAAATCTTGAAGGAGCTTCTGGATCTTGGGAATACGGGTGGA 7429820 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || |||||||| |||| || | | | || || || || || | ||| || || | Sbjct 7429821 CCCTCCGACCAAGACGACCTCGTGGATCTGGGACTTGTCCATTTTGGCGTCGCGGAGGGC 7429880 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || || || |||| |||||||| ||| |||||| || ||||| | || Sbjct 7429881 CTTCTCCACGGGCTCCAGCGTGCCACGGAACAGGTCAGAACACAGCTCTTCAAACCTGGC 7429940 Query 7261 ACGGGTAATGGATGTA-TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG 7319 || || | | || | ||||| || | || |||| | || || || || |||| || Sbjct 7429941 CCGAGTCA-GCTTGGAGTAGAAGTCGATCCCTTCGTGCAGAGAGTCGATCTCGATGGCTG 7429999 Query 7320 --TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377 | |||| | || || | ||| | ||| || |||||||||||||||| | ||||| Sbjct 7430000 CCTCCGTGC--TGGACGACAGCGTCCTCTTGGCCCGCTCACACGCCGTTCTCAGTCGACG 7430057 Query 7378 AAGGGCACGCGGGTT--ACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAG 7435 | ||| |||||||| | || || || || || | || ||||| || ||||| | Sbjct 7430058 GATGGCCCGCGGGTTGGAACGCAA--GTCCTTTTTGTACTTGCGTTTGAATTCTTCGACG 7430115 Query 7436 AAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTC 7495 ||||| | || ||| ||||| ||||| || |||| || || || || || || Sbjct 7430116 AAGTGGTTGACGATTCTGTTGTCGAAGTCTTCCCCGCCCAGATGGGTGTCGCCTGCCGTG 7430175 Query 7496 GCTTTGACTTC--AAAGATACCTC-CTTCAATGTTTAACAACGAAACATCAAACGTACCA 7552 | ||||| | || | || | | || ||| | | | || || || ||||| || Sbjct 7430176 GAGCGCACTTCGAACAGCTGCCCCTCGTCGATGGTCAGGATGGACACGTCGAACGTCCCG 7430235 Query 7553 CCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT-TTGTTCTTATCGAGACCGTA 7611 || |||| ||| | || | |||||| | || || || |||||| || || || || Sbjct 7430236 CCGCCCAAGTCGTAGATCAAGACGTTCTTCTC-TCCACTCAGGTTCTTGTCCAGGCCATA 7430294 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAG 7670 |||| || || || |||||||| || || || | ||||| ||| || || || || Sbjct 7430295 GGCGAGCGCGGCTGCGGTTGGTTCGTTGATGATTCTTAAGAC-GTTGAGACCGGCGATCC 7430353 Query 7671 TTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730 | | || ||||| || || || || ||||| ||||| ||||| ||||| || || | || Sbjct 7430354 TCCCGGCGTCTTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAAGCCGGAACGGTGATGA 7430413 Query 7731 CCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAA 7790 | ||||| ||| || || || || | ||||| | || ||||| || || || | Sbjct 7430414 CGGCGTCTCGGACGGGCTGGCCTAGGTAAGCCTCCGCCGTCTCCTTCATCTTAGTCAGCA 7430473 Query 7791 CCATCGA 7797 ||||||| Sbjct 7430474 CCATCGA 7430480 >seq75 Length=2222630 Score = 113 bits (124), Expect = 6e-20 Identities = 274/415 (66%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 6901 CGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGA 6960 |||||| || | | || | ||| ||||| | ||| || || || | || ||||| Sbjct 1601623 CGTCGTGTTACGCTTGATGAGCGGCGTCATGACACCGCCGGCCGTCTCAATACCTAGAGA 1601682 Query 6961 CAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAA 7020 ||| || | |||||||| |||| |||||| || || || | || || | || Sbjct 1601683 CAGGGGGGCAACGTCCAACAGTAGCAGGTCCTGCACCTCCTCAGACTTGTCTCCGGACAA 1601742 Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||||||||| ||||| | || ||||| || || ||||| || ||||| || | || Sbjct 1601743 GATGGCGGCCTGGACGGCGGCGCCGTACGCCACGGCCTCGTCAGGGTTGATGGACTTGCA 1601802 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 ||| || || ||||| || | || | || | || || || ||||| || || || Sbjct 1601803 CAGCTCCTTGCCGTTGAAGAAGTCTTGCAGCAGCTTCTGGATCTTGGGGATACGGGTGGA 1601862 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || ||||||| ||||| || | | | | || || | ||| | ||| || || | Sbjct 1601863 GCCTCCGACCAGCACGATCTCGTGGATCTGGGCCTTGTCCAGCTTGGCGTCGCGGAGAGA 1601922 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || || || |||| |||||||| |||| ||| ||||||||||| || Sbjct 1601923 CTTCTCCACGGGCTCCAGGGTGCCACGGAACAGGTCCGCGTTCAGCTCCTCAAAACGGGC 1601982 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 ||||| ||||| || ||||| || | || ||| | | || ||||| || ||| Sbjct 1601983 GCGGGTGATGGACGTGTAGAAGTCGATACCTTCGAACAGGGAGTCAATCTCGATG 1602037 >seq115 Length=5728022 Score = 105 bits (116), Expect = 8e-18 Identities = 227/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 22492 CCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATG 22551 ||||| | |||| ||||| || ||||| | ||||| ||||| | ||||||| || Sbjct 3214882 CCACAGAGGGAAACCACACCATTCTACCCAAGGTCACCCTATGGAGCAGCTAAACTGTAC 3214823 Query 22552 GGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATA 22611 | || |||| || || || || ||| | |||| |||||||| || || ||||| Sbjct 3214822 GCTTACTGGGTTGTGGTGAACTACAGGGAAGCCTACGACATGTTTGCCTGTAACGGTATC 3214763 Query 22612 ATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTC 22671 | ||||||||||| || | |||| |||| ||| || || | || || || | Sbjct 3214762 CTCTTCAACCACGAGAGTCCACGGAGGGGGGAAACCTTTGTCACCAGGAAGATCACCCGA 3214703 Query 22672 GGTGTCGCTAATATCAGTGC-AGGTAAACAAAA-ATGTTTATACCTTGGTAACCTAGATG 22729 || || || || || ||| ||| | ||||| ||| | || || ||||| |||| Sbjct 3214702 GGGGTGGCCAAAAT-TCTGCTGGGTCAGCAAAACCACATTACA-CTGGGGAACCTGGATG 3214645 Query 22730 CGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAAC 22789 | |||||||| ||||| ||||| || || || ||| |||||| || |||| | Sbjct 3214644 CTAAACGAGACTGGGGACATGCGAAGGACTATGTCAAAGCCATGTGGTTGATGCTACAGC 3214585 Query 22790 AAGATAAACCGGAAGATTTTGTTATTGCAACAGG 22823 | || || || || || |||||||| || ||||| Sbjct 3214584 ATGAGAAGCCAGAGGACTTTGTTATAGCCACAGG 3214551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129640214320