Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq201 91.5 2e-13 seq191 84.2 3e-11 seq99 84.2 3e-11 seq86 84.2 3e-11 seq21 84.2 3e-11 >seq201 Length=905327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| | |||| |||| |||||||| ||||| ||||| ||||| Sbjct 248367 GTAGATGTTGCTGGTGTAAGCCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCTGTGGA 248308 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACC 109866 |||||||||||||| |||| || || ||||| |||| ||| | | ||| ||| Sbjct 248307 GGCTGTGGGCATGGGGGCCAACAGCAGGCTGTTCCGGACACCATGCTGCTTAACC 248253 >seq191 Length=1703199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||||| Sbjct 1096154 TAGCTCAGTTGGTTAGAGCGTCGTGCTGATAACGCGAAGGTCGCGGGTTCGACCCCCGT 1096096 >seq99 Length=2803933 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||||| Sbjct 284616 TAGCTCAGTTGGTTAGAGCGTCGTGCTGATAACGCGAAGGTCGCGGGTTCGACCCCCGT 284558 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||||| Sbjct 288865 TAGCTCAGTTGGTTAGAGCGTCGTGCTGATAACGCGAAGGTCGCGGGTTCGACCCCCGT 288923 >seq86 Length=240524 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||||| Sbjct 210001 TAGCTCAGTTGGTTAGAGCGTCGTGCTGATAACGCGAAGGTCGCGGGTTCGACCCCCGT 209943 >seq21 Length=10574652 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||||| Sbjct 7773340 TAGCTCAGTTGGTTAGAGCGTCGTGCTGATAACGCGAAGGTCGCGGGTTCGACCCCCGT 7773282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973069844400