Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq201 100 3e-16 seq82 100 3e-16 seq183 95.1 1e-14 seq115 95.1 1e-14 seq259 91.5 2e-13 seq209 87.8 2e-12 >seq201 Length=905327 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||| ||||| || | |||| | ||| || || || | |||| |||| Sbjct 244814 GTGTACTCCACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCGAGGTTCTGTTGG 244755 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 ||| ||| ||||||| ||||||||||| ||||||||||| | || ||||||||||| Sbjct 244754 TTAGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGGTTTCCTGTCTCCGTCTGG 244695 Query 106625 GACTTGAGAATTGCCTTCCACAC 106647 | || || || || | |||||| Sbjct 244694 GCCTCGATGATAGCATACCACAC 244672 >seq82 Length=929508 Score = 100 bits (110), Expect = 3e-16 Identities = 278/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 117001 TTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTC 117060 |||||||||||||||||||| || || || |||||| ||||| |||||||| || ||| Sbjct 23207 TTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTC 23266 Query 117061 TTCGC-GTTCCAAATGGGTGGCACCCCA--ACTTGTTTGAGGAGACGATCCGACACATAC 117117 | ||| ||| ||| | | | | || | || | || || | ||| | ||| || Sbjct 23267 T-CGCTGTTGTAAA--GCTTACTGCACATGAGTTCTCCCAGCAGCCTATCTGCGACAAAC 23323 Query 117118 TCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACATGGGAGTGCGTC 117176 || ||||||| |||| || ||||| || || || || ||| || || || || Sbjct 23324 TCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCACA-GGAAGAGCTTC 23382 Query 117177 CAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGT 117236 | | |||| ||| |||||||| ||| || || | | || ||| || || Sbjct 23383 CGTCAGGAACTCTTGCTCAATCTTAACAGCATCGTCGATAATCTGGTGAATGCGCTCCTC 23442 Query 117237 AGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTC 117296 | | || |||| || ||| | | |||||| || ||| |||||||| Sbjct 23443 ACTAGGCTTATTGATCAGGTAGCTGACCATCAGACAGGCAAAGTCGGTGTGCAGACCCTC 23502 Query 117297 ATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAA 117356 |||| || || ||||||||||| || || |||||||| || | |||| |||| Sbjct 23503 GTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCCGGGCATGAGCCCTCTCTTCCTCAA 23562 Query 117357 CCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAA 117415 |||| | || || ||| | ||| ||||| ||||| || |||||| |||||||||| Sbjct 23563 CCAAAAGATTGCTGCGAAGGCCCCAGAGAAAAAGATCCCTTCCACAGCGGCAAACGCAA 23621 >seq183 Length=676410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 288/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || | ||||||||||||||||||||| || || || |||||| ||||| Sbjct 152238 TACTCTCCCACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 152179 Query 117046 AAGTCAAATGGATTCTTCGC-GTTCCAAATGGGTGGCACCCCA--ACTTGTTTGAGGAGA 117102 || ||||| || |||| ||| ||| ||| | | | | || | || | || || Sbjct 152178 AAATCAAAGGGGTTCT-CGCTGTTGTAAA--GCTTACTGCACACGAGTTCTCCCAGCAGC 152122 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT- 117161 | || | ||| |||| ||||||| |||| || ||||| || || | || Sbjct 152121 CTGTCTGCGACAAACTCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAACTTC 152062 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 ||| || || || ||| | |||| ||| |||||||| ||| || || | | || Sbjct 152061 ACA-GGAAGAGCTTCCGTTAGGAACTCTTGCTCAATCTTAACAGCATCGTCGATAATCTG 152003 Query 117222 GTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 ||| || || | | | | | || |||| || ||| | |||||| | Sbjct 152002 GTGAATGAGCTCCTG-ACTAGGCTTATTGATCAGGTAGCTGACCATAAGACAGGCAAAGT 151944 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| |||||||| |||| || || ||||||||||| || || ||||||| Sbjct 151943 CGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCCGGGCATGA 151884 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 | || | |||| ||||||| |||| || ||| | ||||||||| ||||| || |||| Sbjct 151883 GTCCTCTCTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAAGATCCCTTCCA 151824 Query 117401 CACACGCAAACGCAA 117415 || |||||||||| Sbjct 151823 CAGCGGCAAACGCAA 151809 >seq115 Length=5728022 Score = 95.1 bits (104), Expect = 1e-14 Identities = 254/382 (66%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 |||||||||| || || ||||||||||| ||| ||||| ||||| | || Sbjct 3214929 TCTATCAAGCGTCGTCGAGTGAGATGTTTGGCTTGGTGCAGGAGGTGCCACAGAGGGAAA 3214870 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 7023 ||||| ||||||||| | || ||| |||| | || | || | ||| | | Sbjct 3214869 CCACACCATTCTACCCAAGGTCACCCTATGGAGCAGCTAAACTGTACGCTTACTGGGTTG 3214810 Query 7024 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 7083 | || ||| | || | |||| ||||||| || ||| |||||||||||||| | Sbjct 3214809 TGGTGAACTACAGGGAAGCCTACGACATGTTTGCCTGTAACGGTATCCTCTTCAACCACG 3214750 Query 7084 AATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACC-GAGGG-TATCAAACA 7141 | || | | || | | ||||||||| | |||||| ||| ||||| | | || Sbjct 3214749 AGAGTCCACGGAGGGGGGAAACCTTTGTCACCAGGAAGATCACCCGAGGGGTGGCCAA-- 3214692 Query 7142 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 ||| || |||| | | | |||| | |||| ||| | | || | |||| || Sbjct 3214691 AATTCTGCTGGGTCAGCAAAACCACATTACACTGGGGAACCTGGATGCTAAACGAGACTG 3214632 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCC-G 7260 ||| || |||||||||||||| ||||||||||| | ||||| || || || |||||| | Sbjct 3214631 GGGACATGCGAAGGACTATGTCAAAGCCATGTGGTTGATGCTACAGCATGA-GAAGCCAG 3214573 Query 7261 ACGAATATGTAGTAGCAACGGG 7282 | || | ||| |||| || || Sbjct 3214572 AGGACTTTGTTATAGCCACAGG 3214551 >seq259 Length=546029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 285/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || ||||| || | ||||||||||||||||||||| || || || |||||| ||||| Sbjct 365088 TACTCCCCCACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 365147 Query 117046 AAGTCAAATGGATTCTTCGC-GTTCCAAATGGGTGGCACCCCA--ACTTGTTTGAGGAGA 117102 |||||||| || |||| ||| ||| ||| | | | | || | || || || Sbjct 365148 AAGTCAAAGGGGTTCT-CGCTGTTGTAAA--GCTTACTGCACATGAGTTCCCCCAGCAGC 365204 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162 | ||| | ||| |||| ||||||| |||| || ||||| || || || | Sbjct 365205 CTATCTGCGACAAACTCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCCT- 365263 Query 117163 CATGGGA-GTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 || |||| | || ||| | |||| || |||||||| ||| || || | | || Sbjct 365264 CACGGGAAGAGCTTCCGTCAGGAACTTTTGCTCAATCTTAACAGCATCGTCAATAATCTG 365323 Query 117222 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 ||| || || | | || |||| || | ||| | |||||| || Sbjct 365324 GTGAATGCGCTCCTCACTAGGCTTATTGATCAGATAGCTGACCATAAGACAGGCAAAGTC 365383 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 ||| |||||||| |||| || || ||||| ||||| || ||||||||||| Sbjct 365384 GGCGTGCAGACCCTCGTCTCTACTGATCAGCTCATTGGAGAAAGTCAGCCCTGGCATGAG 365443 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 || | ||| ||||||| |||| || ||| | ||||||||| || || || ||||| Sbjct 365444 TCCTCTTTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAATATCCCTTCCAC 365503 Query 117402 ACACGCAAACGCAA 117415 | |||||||||| Sbjct 365504 AGCGGCAAACGCAA 365517 >seq209 Length=3175921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| |||| || || ||||||||||| || || Sbjct 1714146 GGCAAAGTCGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCC 1714205 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || | |||| |||||||| | || || ||| | ||| ||||| ||||| Sbjct 1714206 GGGCATGAGCCCTCTCTTCCTCAACCAAAAGATTGCTGCGAAGGCCCCAGAGAAAAAGAT 1714265 Query 117393 ACCCTCCACACACGCAAACGCAA 117415 || |||||| |||||||||| Sbjct 1714266 CCCTTCCACAGCGGCAAACGCAA 1714288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977864845520