Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq116 114 1e-20 >seq116 Length=4760417 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || ||||| ||||| || || || ||||| |||| | || | | | Sbjct 3279191 ACGCAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 3279132 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || ||||| || | |||||| || || || || ||||| || || Sbjct 3279131 ATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 3279072 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || || |||| | ||||| || | |||||||||||| |||| Sbjct 3279071 GTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGTTCCACTTCAAGGGTGAT 3279012 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || || || |||||||| Sbjct 3279011 GGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3278976 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || |||||||| || || || || ||||| |||| | || | | | Sbjct 3276555 ACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 3276496 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || || || || | |||||| || || || || ||||| || || Sbjct 3276495 ATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTT 3276436 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || || |||| | ||||| || | ||||||||||| |||| Sbjct 3276435 GTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCAAGGGTGAT 3276376 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || || || |||||||| Sbjct 3276375 GGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276477802086