Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq116 105 4e-17 >seq116 Length=4760417 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||||||||| || ||| || | || || |||| || || Sbjct 3279425 ACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 3279366 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 3279365 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGTGGAATGCC 3279306 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| ||||| |||||| || |||| || | || |||| Sbjct 3279305 CTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAA-CCTCAA 3279247 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || || ||||| ||||| || || Sbjct 3279246 GAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTG 3279207 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||||||||| || ||| || | || || || | || || Sbjct 3277245 ACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 3277186 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | ||||| ||||| || || ||||| || || || || || || || Sbjct 3277185 GCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 3277126 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| |||||| ||||| || |||| || | || |||| Sbjct 3277125 CTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAA-CCTCAA 3277067 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || || ||||| ||||| || || Sbjct 3277066 GGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTG 3277027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268162127848904