Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq70 109 6e-19 >seq70 Length=4241797 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 158383 TACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTA 158442 ||||| ||||| || ||||| ||||| | || || || || |||| ||||||||||| Sbjct 4022649 TACTCCTGCCGGGCGGGCGCATGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACCGTG 4022708 Query 158443 GACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACT 158502 || |||||||||||||||||||||||||| || ||||||| | || | | | ||||| Sbjct 4022709 GATCAAAGCGACCAGTCCTTCCTGGACGACGATCAAATCGCAGCAGGGTACGTCCTGACC 4022768 Query 158503 TGTGTTTCTTATCCTACAAGTGA 158525 ||| | | || || | |||||| Sbjct 4022769 TGTATGGCCTACCCAAGAAGTGA 4022791 Score = 100 bits (110), Expect = 3e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 158383 TACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTA 158442 ||||| ||||| || ||||| ||||| | || || || || |||| ||||||||||| Sbjct 4032329 TACTCCTGCCGAGCGGGCGCGTGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACCGTG 4032270 Query 158443 GACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCG 158482 || || |||||||||||||||||||| || |||||||||| Sbjct 4032269 GATCAGAGCGACCAGTCCTTCCTGGATGACGACCAAATCG 4032230 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 158368 GGTGTCGAACTCAATTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTC 158427 || || |||||| ||||| ||||| || ||||| || | | || || || || || Sbjct 4027331 GGCGTGGAACTCCCCTACTCCTGCCGGGCGGGCGCATGCACCACCTGCGCCGGTAAGATC 4027390 Query 158428 GTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCT 158487 || ||||||||||| || || ||||||||| |||||||||| | |||||||| | | Sbjct 4027391 GTGTCTGGCACCGTGGATCAGAGCGACCAGACCTTCCTGGATGCGGACCAAATGGCAGCA 4027450 Query 158488 GGTTTCATTCTGACTTGTGTTTCTTATCCTACAAGTGA 158525 || ||| | ||||| || || | || || || ||||| Sbjct 4027451 GGGTTCGTCCTGACCTGCGTGGCCTACCCAACCAGTGA 4027488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547744474957680