Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq70 104 3e-17 >seq70 Length=4241797 Score = 104 bits (114), Expect = 3e-17 Identities = 148/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 102775 TTAGTAGAGTGATTCTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCAC 102834 ||||||||| || || ||||| | || || |||| || |||||| ||||| Sbjct 4032147 TTAGTAGAGGGACTCCTCTTGGTGGGTAGTGATGACCAGGTCGCTGGTTGGGCGGGCCAC 4032206 Query 102835 GCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTG 102894 ||||||||| || | |||||| | | ||| ||||||||||| ||||| || || || Sbjct 4032207 GCAGGTCAGGACGTACCCTGCTGCGATTTGGTCGTCATCCAGGAAGGACTGGTCGCTCTG 4032266 Query 102895 ATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAGGA 102954 ||| || || || || | |||||||| || || || |||||||| || || || ||||| Sbjct 4032267 ATCCACGGTGCCAGACACGATCTTACCGGCGCAGGTGGAACACGCGCCCGCTCGGCAGGA 4032326 Query 102955 ATAAGGCAGATCAACACC-TGCTTCAT 102980 || || || || | || |||| ||| Sbjct 4032327 GTAGGGGAGGTCCAGTCCTTGCTGCAT 4032353 Score = 89.7 bits (98), Expect = 7e-13 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 102821 GTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAG 102880 |||||||| |||||||||||||| || || |||||| | | ||| || ||||||| ||| Sbjct 4027482 GTTGGGTAGGCCACGCAGGTCAGGACGAACCCTGCTGCCATTTGGTCCGCATCCAGGAAG 4027423 Query 102881 GATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCA 102940 | || || ||||| || || || || | |||||||| || || || | || || Sbjct 4027422 GTCTGGTCGCTCTGATCCACGGTGCCAGACACGATCTTACCGGCGCAGGTGGTGCATGCG 4027363 Query 102941 CCAGCACGACAGGAATAAGGCAGATCAACACC-TGCTTCAT 102980 || || || ||||| || || || || || || |||| ||| Sbjct 4027362 CCCGCCCGGCAGGAGTAGGGGAGTTCCACGCCTTGCTGCAT 4027322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633510448269840