Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq115 156 6e-33 seq211 118 1e-21 >seq115 Length=5728022 Score = 156 bits (172), Expect = 6e-33 Identities = 270/386 (70%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 47786 TTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCT 47845 |||||||||| |||||||| || || || | || || || ||||| |||||||| || | Sbjct 3214549 TTCCTGTGGCTATAACAAAGTCCTCTGGCTTCTCATGCTGTAGCATCAACCACATGGCTT 3214608 Query 47846 CGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAA-A 47904 |||||| || | |||||||||||||| || ||||| || || || || | ||| Sbjct 3214609 TGACATAGTCCTTCGCATGTCCCCAGTCTCGTTTAGCATCCAGGTTCCCCAG-TGTAATG 3214667 Query 47905 CAGTCTTGCTTACCTTCAG-AGATTGCTTT---TAATGCTCTTGTAATCTTACGAGTTAC 47960 || ||||| ||| ||| ||| | ||| | ||| || ||||| | || || Sbjct 3214668 TGGTTTTGCTGACC--CAGCAGAAT--TTTGGCCACCCCTCGGGTGATCTTCCTGGTGAC 3214723 Query 47961 AAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACAT 48020 ||| ||||| || | | |||| || || || || || ||||| |||||||| |||| Sbjct 3214724 AAAGGTTTCCCCCCTCCGTGGACTCTCGTGGTTGAAGAGGATACCGTTACAGGCAAACAT 3214783 Query 48021 TCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATA 48080 |||| | ||| | |||||| || | |||||| | || ||||| || | ||||| Sbjct 3214784 GTCGTAGGCTTCCCTGTAGTTCACCACAACCCAGTAAGCGTACAGTTTAGCTGCTCCATA 3214843 Query 48081 AGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATA 48140 || || | ||| ||||| |||||||| || ||||||| ||| |||||| ||| | Sbjct 3214844 GGGTGACCTTGGGTAGAATGGTGTGGTTTCCCTCTGTGGCACCTCCTGCACCAAGCCAAA 3214903 Query 48141 AAGTTCACTGGTGGATGCTTGATAGA 48166 | ||||| | || |||||||||| Sbjct 3214904 CATCTCACTCGACGACGCTTGATAGA 3214929 >seq211 Length=3181262 Score = 118 bits (130), Expect = 1e-21 Identities = 258/383 (67%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 47786 TTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCT 47845 ||||||| | || ||||| || || |||| || || ||||| | |||||| ||| Sbjct 2898212 TTCCTGTAGATATTACAAAGTCTTCCGGTTTCTCACACTGCAGCATCAGCCACATGGCCC 2898153 Query 47846 CGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAAC 47905 |||||| ||| | ||||| ||||| || | ||||||| || || || || || Sbjct 2898152 TGACATAGTCTTTAGCATGCCCCCAATCCCTCTGTGCATCGAGGTTCCCCAGCACTACTT 2898093 Query 47906 AGTCTTGCTTACCTTCAG-AGATTGCTTTTAATGC-TCTTGTAATCTTACGAGTTACAAA 47963 | ||| | || ||| || | | || | || || ||||| | || || || Sbjct 2898092 CGGTTTGAATGCC--CAGCAGTATTTTAGCAACACCTCGGGTGATCTTCCTGGTAACGAA 2898035 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 ||||| || | ||| ||| || || || || || || || |||||||| |||| Sbjct 2898034 GGTTTCCCCTCTTCTAGGACTCTCGTGGTTGAATAGGATGCCGTTACAGGCAAACATGTT 2897975 Query 48024 GTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGG 48083 ||| | || | || ||| ||||||||||| |||| || || || | |||||||| Sbjct 2897974 GTAGGCCTCTCTGTAATTCACCACTATCCAGTAAGCATACAGCTTGGCCGCTCCATAAGG 2897915 Query 48084 AGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAG 48143 ||| | |||||||| || ||||| || ||||||| ||| |||||| || | | Sbjct 2897914 AGATCTGGGATAGAATGGCGTGGTTTCCTTCTGTGGGACCTCCTGCACCAAGCCGAACAT 2897855 Query 48144 TTCACTGGTGGATGCTTGATAGA 48166 |||||||| || |||||||||| Sbjct 2897854 CTCACTGGTAGACGCTTGATAGA 2897832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665491089165360