Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq115 107 2e-18 seq82 100 3e-16 seq183 95.1 1e-14 seq259 91.5 2e-13 seq201 91.5 2e-13 seq209 87.8 2e-12 >seq115 Length=5728022 Score = 107 bits (118), Expect = 2e-18 Identities = 214/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 177589 CCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCA 177648 || || || | |||| | || || | || || || || ||||| | ||||||||||| Sbjct 3214551 CCTGTGGCTATAACAAAGTCCTCTGGCTTCTCATGCTGTAGCATCAACCACATGGCTTTG 3214610 Query 177649 ACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAAC 177708 ||||||||||| ||||| |||||||||| ||| | ||||| || ||| || | Sbjct 3214611 ACATAGTCCTTCGCATGTCCCCAGTCTCGTTTAGCATCCAGGTTCCCCAGTGTAATGTGG 3214670 Query 177709 TCTCTCTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCG 177768 | | || ||| || ||||| || || || |||||| | ||||||||| Sbjct 3214671 TTTTGCTGACCCAGCAGAATTTTGGCCACCCCTCGGGTGATCTTCCTGGTGACAAAGGTT 3214730 Query 177769 GCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAG 177828 | || | | || ||||||||||||||||| ||| |||||| |||| | ||| Sbjct 3214731 TCCCCCCTCCGTGGACTCTCGTGGTTGAAGAGGATACCGTTACAGGCAAACATGTCGTAG 3214790 Query 177829 GATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGAT 177888 | ||| | ||| || || | ||||| |||| || ||| | | |||||| || Sbjct 3214791 GCTTCCCTGTAGTTCACCACAACCCAGTAAGCGTACAGTTTAGCTGCTCCATAGGGTGAC 3214850 Query 177889 CGTGGGTAGAAGGGTGT 177905 | ||||||||| ||||| Sbjct 3214851 CTTGGGTAGAATGGTGT 3214867 >seq82 Length=929508 Score = 100 bits (110), Expect = 3e-16 Identities = 278/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGT 65146 |||||||||| |||||| || ||||| ||||| ||| | ||| || || | ||||| Sbjct 23621 TTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCTGGGGCCTTCGCAGCAATCTTTTGGT 23562 Query 65147 TGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATG 65206 ||| |||| | || |||||||| || || ||||||||||| || || |||| | Sbjct 23561 TGAGGAAGAGAGGGCTCATGCCCGGGCTGACTTTCTCAAATGAGCTGATCAGTAGAGACG 23502 Query 65207 AGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTA 65266 ||||||| ||| || |||||| | | ||| || |||| || | | Sbjct 23501 AGGGTCTGCACACCGACTTTGCCTGTCTGATGGTCAGCTACCTGATCAATAAGCCTAGTG 23442 Query 65267 CCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGG 65326 || || ||| || | | || || ||| |||||||| ||| |||| | || Sbjct 23441 AGGAGCGCATTCACCAGATTATCGACGATGCTGTTAAGATTGAGCAAGAGTTCCTGACGG 23382 Query 65327 ACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAG 65385 | || || || ||| || || || || ||||| || |||| ||||||| ||| Sbjct 23381 AAGCTCTTCC-TGTGAAGCTGATTGGGATGAATCAAGACCTGATGAAACAGTACATCGAG 23323 Query 65386 TATGTGTCGGATCGTCTCCTCAAACAAGT--TGGGGTGCCACCCATTTGGAAC-GCGAAG 65442 | ||| | ||| | || || | || | || | | | | ||| ||| ||| || Sbjct 23322 TTTGTCGCAGATAGGCTGCTGGGAGAACTCATGTGCAGTAAGC--TTTACAACAGCG-AG 23266 Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAA 65501 || || |||||||| ||||| |||||| || || || |||||||||||||||||||| Sbjct 23265 AACCCCTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAA 23207 >seq183 Length=676410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 288/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGT 65146 |||||||||| |||||| || ||||| ||||||||| | ||| || |||| |||| Sbjct 151809 TTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCCGGGGCCTTCGCAGCAATTTTCTGGT 151868 Query 65147 TGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATG 65206 ||| |||| | || |||||||| || || ||||||||||| || || |||| | Sbjct 151869 TGAGGAAGAGAGGACTCATGCCCGGGCTGACTTTCTCAAATGAGCTGATCAGTAGAGACG 151928 Query 65207 AGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTA 65266 ||||||| ||| || |||||| | ||| || |||| || | | Sbjct 151929 AGGGTCTGCACACCGACTTTGCCTGTCTTATGGTCAGCTACCTGATCAATAAGCCTAGT- 151987 Query 65267 CCGAAACT-ATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTG 65325 | | | || || ||| || | | || || ||| |||||||| ||| |||| | | Sbjct 151988 CAGGAGCTCATTCACCAGATTATCGACGATGCTGTTAAGATTGAGCAAGAGTTCCTAACG 152047 Query 65326 GACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGA 65384 || || || || ||| || | || || ||||| || |||| ||||||| || Sbjct 152048 GAAGCTCTTCC-TGTGAAGTTGATTGGGATGAATCAAGACCTGATGAAACAGTACATCGA 152106 Query 65385 GTATGTGTCGGATCGTCTCCTCAAACAAGT--TGGGGTGCCACCCATTTGGAAC-GCGAA 65441 || ||| | || | || || | || | || | | | | ||| ||| ||| | Sbjct 152107 GTTTGTCGCAGACAGGCTGCTGGGAGAACTCGTGTGCAGTAAGC--TTTACAACAGCG-A 152163 Query 65442 GAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAA 65501 ||| || ||||| || ||||| |||||| || || || |||||||||||||||||||| Sbjct 152164 GAACCCCTTTGATTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAA 152223 Query 65502 GCGAGTTGGGGACTA 65516 | | || || || || Sbjct 152224 GAGGGTGGGAGAGTA 152238 >seq259 Length=546029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 285/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGT 65146 |||||||||| |||||| || || || ||||||||| | ||| || |||| |||| Sbjct 365517 TTGCGTTTGCCGCTGTGGAAGGGATATTTTTCTCCGGGGCCTTCGCAGCAATTTTCTGGT 365458 Query 65147 TGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATG 65206 ||| ||| | || ||||||||||| || ||||| ||||| || || |||| | Sbjct 365457 TGAGGAAAAGAGGACTCATGCCAGGGCTGACTTTCTCCAATGAGCTGATCAGTAGAGACG 365398 Query 65207 AGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACCCACTA 65266 ||||||| ||| || |||||| | ||| | || |||| || | | Sbjct 365397 AGGGTCTGCACGCCGACTTTGCCTGTCTTATGGTCAGCTATCTGATCAATAAGCCTAGTG 365338 Query 65267 CCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGG 65326 || || ||| || | | || || ||| |||||||| || |||| | || Sbjct 365337 AGGAGCGCATTCACCAGATTATTGACGATGCTGTTAAGATTGAGCAAAAGTTCCTGACGG 365278 Query 65327 ACGCAC-TCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAG 65385 | || | |||| || | || || || ||||| || |||| ||||||| ||| Sbjct 365277 AAGCTCTTCCCGTG-AGGCTGATTGGGATGAATCAAGACCTGATGAAACAGTACATCGAG 365219 Query 65386 TATGTGTCGGATCGTCTCCTCAAACAAGT--TGGGGTGCCACCCATTTGGAAC-GCGAAG 65442 | ||| | ||| | || || || | || | | | | ||| ||| ||| || Sbjct 365218 TTTGTCGCAGATAGGCTGCTGGGGGAACTCATGTGCAGTAAGC--TTTACAACAGCG-AG 365162 Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 || || |||||||| ||||| |||||| || || || ||||||||||||||||||||| Sbjct 365161 AACCCCTTTGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 365102 Query 65503 CGAGTTGGGGACTA 65516 | || ||||| || Sbjct 365101 AGGGTGGGGGAGTA 365088 >seq201 Length=905327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | ||||| || | | ||||||||||| |||| || || ||||| |||||| Sbjct 244672 GTGTGGTATGCTATCATCGAGGCCCAGACGGAGACAGGAAACCCCTACATGCTGTACAAG 244731 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 ||||| || |||| ||| ||||||| |||| | || || |||||| || || || Sbjct 244732 GATGCCTGCAACAGCAAGTCTAACCAACAGAACCTCGGCACCATCAAGTGCAGCAACCTC 244791 Query 75995 TGCACGGAAATTTTAGAGTACAC 76017 ||||| || ||| | |||||||| Sbjct 244792 TGCACAGAGATTGTGGAGTACAC 244814 >seq209 Length=3175921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGT 65146 |||||||||| |||||| || ||||| ||||| ||| | ||| || || | ||||| Sbjct 1714288 TTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCTGGGGCCTTCGCAGCAATCTTTTGGT 1714229 Query 65147 TGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATG 65206 ||| |||| | || |||||||| || || ||||||||||| || || |||| | Sbjct 1714228 TGAGGAAGAGAGGGCTCATGCCCGGGCTGACTTTCTCAAATGAGCTGATCAGTAGAGACG 1714169 Query 65207 AGGGTCTCCACCAGGAGTTTGCC 65229 ||||||| ||| || |||||| Sbjct 1714168 AGGGTCTGCACACCGACTTTGCC 1714146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566632066240