Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq267 93.3 8e-14 seq259 87.8 3e-12 seq99 87.8 3e-12 seq232 84.2 4e-11 seq82 84.2 4e-11 >seq267 Length=502492 Score = 93.3 bits (102), Expect = 8e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||||||||| | || || ||||| || || |||||| ||| | || Sbjct 442380 TACATTTCAGAATGGATGTTCTCAATGGCTATCTGGAAGCCATAAAAGCACCTCACCTCA 442439 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | ||| || || ||||| ||||| | ||| ||| || ||||| ||| Sbjct 442440 GTCACCTGCACCTCTTTGGTGAATCTCTCAACCAGATTTTCATTCACGATACCGTCACTA 442499 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| |||||||| | || | ||| || || |||||||| || || || ||| | ||| Sbjct 442500 GCTGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTTTTTCGTTGTCATTCAAACTCTCC 442559 Query 39600 CAA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 ||| | | |||| || || || | || ||||| || ||||||| || |||||||||| Sbjct 442560 CAATGCTCCAAG-TCCTTAGAGACGTCAACTTCCTCCGTTGTCCAGAATGATGCTACGGC 442618 Query 39659 TTTTTTATACATTTG 39673 || || ||||| || Sbjct 442619 CTTCTTGTACATGTG 442633 >seq259 Length=546029 Score = 87.8 bits (96), Expect = 3e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||||||||| | || || ||||| || || ||| || |||||| || Sbjct 378072 TACATTTCAGAATGGATGTTCTCAATGGCTATCTGGAAGCCATAGAAGCACCTTGCCTCA 378131 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | ||| || || ||||| ||||| | ||| ||| || ||||| ||| Sbjct 378132 GTCACCTGCACCTCTTTGGTGAATCTCTCAACCAGATTTTCATTGACTATACCGTCACTA 378191 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| |||||||| | || | ||| || || |||||||| || || || | | ||| Sbjct 378192 GCTGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTTTTTCGTTGTCATTCAGTCTCTCC 378251 Query 39600 CAA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 ||| | |||| || || || | ||| ||||| || ||||||| || |||||||||| Sbjct 378252 CAATGCGCCAAG-TCCTTAGAGAGATCAACTTCCTCCGTTGTCCAGAATGATGCTACGGC 378310 Query 39659 TTTTTTATACATTTG 39673 || || ||||| || Sbjct 378311 CTTCTTGTACATGTG 378325 >seq99 Length=2803933 Score = 87.8 bits (96), Expect = 3e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||||||||| | || || || || || || ||| || |||||| || Sbjct 2309290 TACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTTGCCTCA 2309231 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | ||| || || ||||| |||||| | ||| ||| || ||||| ||| Sbjct 2309230 GTCACCTGCACCTCTTTGGTGAATCTTTCAACCAGATTTTCATTGACTATACCGTCACTA 2309171 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| |||||||| | || | ||| || || |||||||| || || || | | ||| Sbjct 2309170 GCTGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTTTTTCGTTGTCATTCAGTCTCTCC 2309111 Query 39600 CAA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 ||| | |||| || || || | ||| ||||| || ||||||| || |||||||||| Sbjct 2309110 CAATGCGCCAAG-TCTTTAGAGAGATCAACTTCCTCCGTTGTCCAGAATGATGCTACGGC 2309052 Query 39659 TTTTTTATACATTTG 39673 || || ||||| || Sbjct 2309051 CTTCTTGTACATGTG 2309037 >seq232 Length=1218932 Score = 84.2 bits (92), Expect = 4e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||||||||| | || || || || || || ||| || |||| | || Sbjct 37765 TACATTTCAGAATGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCACCTTACCTCA 37706 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | ||| || || ||||| ||||| | ||| ||| || ||||| ||| Sbjct 37705 GTCACCTGCACCTCTTTGGTGAATCTCTCAACCAGATTTTCATTAACGATACCGTCACTA 37646 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| |||||||| | || | ||| || || |||||||| || || || | | | ||| Sbjct 37645 GCTGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTTTTTCGTTGTCATTCAGACTCTCC 37586 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 ||| || | ||| || || | || ||||| || ||||||| || |||||||||| Sbjct 37585 CAATGCTCCAAATCCTTAGACAGGTCAACTTCCTCCGTTGTCCAGAATGATGCTACGGCC 37526 Query 39660 TTTTTATACATTTG 39673 || || ||||| || Sbjct 37525 TTCTTGTACATGTG 37512 >seq82 Length=929508 Score = 84.2 bits (92), Expect = 4e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||||||||| | || || || || || || ||| || ||| || || Sbjct 23771 TACATTTCAGAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTGGCCTCA 23830 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | ||| || || ||||| || || | ||| ||| || ||||| ||| Sbjct 23831 GTCACCTGCACCTCTTTGGTGAATCTCTCTACCAGATTTTCATTGACGATACCGTCACTA 23890 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| |||||||| | || | ||| || || |||||||| || || || | | | ||| Sbjct 23891 GCTGCAAAGAATGCCAGGACGTGTTTGATGAAGTGTTTTTCGTTGTCATTCAGACTCTCC 23950 Query 39600 CAA-GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGA 39658 ||| | | |||| || || || | ||| ||||| || ||||||| || |||||||||| Sbjct 23951 CAATGCTCCAAG-TCCTTGGAGAGATCAACTTCCTCCGTTGTCCAGAATGATGCTACGGC 24009 Query 39659 TTTTTTATACATTTG 39673 || || ||||| || Sbjct 24010 CTTCTTGTACATGTG 24024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131496948400