Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq162 138 3e-27 seq201 102 2e-16 >seq162 Length=11512737 Score = 138 bits (152), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| ||||| ||||||||||| ||||| || || ||||||| |||||||| || Sbjct 7629172 ACCAGTTTCTGATGTCTTTACAGCTGTGTCAATCAGTCCCTCACGACCTCCCATAGCGTG 7629231 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | |||| ||| ||| || || | | | | ||| |||| ||||| ||||||| Sbjct 7629232 GAAGAAAAACTCTGACGG-CGTCAGGCCGGCCAGATACGAGTTCTCCACGAACCCACGCG 7629290 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| || | |||| |||| | ||||| ||||| |||| | ||||| | | Sbjct 7629291 ACTCAGGACCGTAGTCGTCCTTGATGAAGTGGGGCAGTGTCCGATGGCGGAAGCCGAAGG 7629350 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 ||||||||||||| || |||||||| ||||||| Sbjct 7629351 GGATACGCTTTCCCTCCACGTTCTGTTGTCCCA 7629383 >seq201 Length=905327 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || |||||||| ||| ||||| | |||||||||||| | |||| |||| Sbjct 244813 TGTACTCCACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCGAGGTTCTGTTGGT 244754 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 |||| || ||||| || ||||||||||| || ||||| ||| ||||||||||| |||| | Sbjct 244753 TAGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGGTTTCCTGTCTCCGTCTGGG 244694 Query 155749 CGTC 155752 | || Sbjct 244693 CCTC 244690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810094650126