Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq30 114 1e-20 >seq30 Length=7729275 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||||||||||||||| || ||||| || || || ||||| || || | Sbjct 7571852 TCCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 7571911 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || ||||| || | || | | ||||| || || || Sbjct 7571912 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGG 7571971 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || |||||| |||| | ||||| || | || || Sbjct 7571972 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCCAC 7572031 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || ||||| || | ||| || ||||| |||||||| Sbjct 7572032 TTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7572079 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||||||| || ||||| || || || ||||| || || | Sbjct 7573221 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573280 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | || | | ||||| || || || Sbjct 7573281 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573340 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| |||| | ||||| || | || ||| Sbjct 7573341 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACT 7573400 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || ||||| |||||||| Sbjct 7573401 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573447 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||||||| || ||| ||| || || ||||| || || | Sbjct 7572081 CCACCACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGAC 7572140 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || ||||| || | || | | ||||| || || || Sbjct 7572141 AGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572200 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || |||||| |||| | ||||| || | || || Sbjct 7572201 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACC 7572260 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | |||||| || || |||||||| Sbjct 7572261 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572307 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||||||| || ||||| || || || ||||| || || | Sbjct 7573449 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573508 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | || | | ||||| || || || Sbjct 7573509 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573568 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | || | ||||| || | || || Sbjct 7573569 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAACC 7573628 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| | ||| || ||||| |||||||| Sbjct 7573629 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 7573675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217331446118