Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq70 95.1 1e-14 >seq70 Length=4241797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 158263 CTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGT 158322 |||||| || || || || || || || | || || ||||| || || ||||| || || Sbjct 4022648 CTACTCCTGCCGGGCGGGCGCATGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACCGT 4022707 Query 158323 TGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTAC 158382 ||||| || || ||||| ||||| ||||| ||||||||||||||||| | || || || Sbjct 4022708 GGATCAAAGCGACCAGTCCTTCCTGGACGACGATCAAATCGCAGCAGGGTACGTCCTGAC 4022767 Query 158383 GTGTGTAGCATATCCAA 158399 ||| | || || |||| Sbjct 4022768 CTGTATGGCCTACCCAA 4022784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 158263 CTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGT 158322 |||||| || || || || || ||| | | || || ||||| || || ||||| || || Sbjct 4027345 CTACTCCTGCCGGGCGGGCGCATGCACCACCTGCGCCGGTAAGATCGTGTCTGGCACCGT 4027404 Query 158323 TGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTAC 158382 |||||||| || ||| | ||||| || | || ||||| |||||||| || || || || Sbjct 4027405 GGATCAGAGCGACCAGACCTTCCTGGATGCGGACCAAATGGCAGCAGGGTTCGTCCTGAC 4027464 Query 158383 GTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAACCTTTA 158442 || || || || ||||| ||| || | ||| | |||||||||||||| || Sbjct 4027465 CTGCGTGGCCTACCCAACCAGTGACCTGGTCATCACTACCCACCAAGAGGAGAACCTCTA 4027524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 158263 CTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGT 158322 |||||| || || || || || || || | || || ||||| || || ||||| || || Sbjct 4032330 CTACTCCTGCCGAGCGGGCGCGTGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACCGT 4032271 Query 158323 TGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTAC 158382 |||||||| || ||||| ||||| || || || |||||||||||||| | || || || Sbjct 4032270 GGATCAGAGCGACCAGTCCTTCCTGGATGACGACCAAATCGCAGCAGGGTACGTCCTGAC 4032211 Query 158383 GTGTGTAGC 158391 || || || Sbjct 4032210 CTGCGTGGC 4032202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545270887263840