Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq70 95.1 1e-14 >seq70 Length=4241797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 138557 ATGAAGCAGGTATTG-ATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCT 138615 ||| |||| | | || | || ||||||||||| || || || || ||||| ||||| || Sbjct 4032353 ATGCAGCAAGGACTGGACCTCCCCTACTCCTGCCGAGCGGGCGCGTGTTCCACCTGCGCC 4032294 Query 138616 GGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAA 138675 ||||| | || || || || |||||| |||||||| ||||| ||||| |||||| Sbjct 4032293 GGTAAGATCGTGTCTGGCACCGTGGATCAGAGCGACCAGTCCTTCCTGGATGACGACCAA 4032234 Query 138676 ATTGCAGCAGGATTTATCATGACTTGCGTAGC 138707 || |||||||| | || |||| ||||| || Sbjct 4032233 ATCGCAGCAGGGTACGTCCTGACCTGCGTGGC 4032202 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 138557 ATGAAGCA-GGTATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCT 138615 ||| |||| || | || || ||||||||||| || || || ||||| | ||||| || Sbjct 4027322 ATGCAGCAAGGCGTGGAACTCCCCTACTCCTGCCGGGCGGGCGCATGCACCACCTGCGCC 4027381 Query 138616 GGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAA 138675 ||||| | || || || || |||||| |||||| | ||||| |||| |||||| Sbjct 4027382 GGTAAGATCGTGTCTGGCACCGTGGATCAGAGCGACCAGACCTTCCTGGATGCGGACCAA 4027441 Query 138676 ATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCAC 138716 || |||||||| || || |||| ||||| || ||||| || Sbjct 4027442 ATGGCAGCAGGGTTCGTCCTGACCTGCGTGGCCTACCCAAC 4027482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 138557 ATGAAGCAGGTATTG-ATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCT 138615 ||| |||| | | || | || ||||||||||| || || || |||||||| ||||| || Sbjct 4022625 ATGCAGCAAGGACTGGAGCTCCCCTACTCCTGCCGGGCGGGCGCATGTTCCACCTGCGCC 4022684 Query 138616 GGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAA 138675 ||||| | || || || || ||||| |||||||| ||||| || || || ||| Sbjct 4022685 GGTAAGATCGTGTCTGGCACCGTGGATCAAAGCGACCAGTCCTTCCTGGACGACGATCAA 4022744 Query 138676 ATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCC 138713 || |||||||| | || |||| || | || ||||| Sbjct 4022745 ATCGCAGCAGGGTACGTCCTGACCTGTATGGCCTACCC 4022782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605664186805680