Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq30 149 1e-30 seq116 141 2e-28 >seq30 Length=7729275 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||||||| ||||| ||||| || |||||||| || || || ||||| Sbjct 7572765 CCACCACGCAGACGCAGAACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572824 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || ||||| || ||||| || | || || ||||| || Sbjct 7572825 AGGGTGCGGCCATCTTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572884 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||| || || || ||| || || || Sbjct 7572885 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATTGTGTCAGACGGCTCAACC 7572944 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| || || ||||| |||||||| Sbjct 7572945 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACAAAGATCTGCAT 7572991 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 7572537 CCACCACGCAGACGCAGGACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572596 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || | || || ||||| || Sbjct 7572597 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7572656 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || ||||| || || || || || || Sbjct 7572657 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATTGTGTCGGATGGCTCAACC 7572716 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| ||||| |||||||| Sbjct 7572717 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 7572763 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || || || || || || || ||||| || || || ||||| Sbjct 7571853 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7571912 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || ||||| || | || || ||||| || Sbjct 7571913 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7571972 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||||||||| || || || || ||| Sbjct 7571973 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCCACT 7572032 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||| | ||||| ||||| |||||||| Sbjct 7572033 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7572079 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| || || || |||||||| || || || ||||| Sbjct 7572309 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7572368 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || ||||| || | || || ||||| || Sbjct 7572369 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572428 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||||||||| || || || || || Sbjct 7572429 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACC 7572488 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| || || || || |||||||| Sbjct 7572489 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572535 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||||||| ||||| || || || ||||| || || || ||||| Sbjct 7572993 CCACCACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 7573052 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || | || || ||||| || Sbjct 7573053 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573112 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || |||||||| || || || || ||| Sbjct 7573113 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACT 7573172 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||| | ||||| ||||| |||||||| Sbjct 7573173 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573219 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || || || || || || || ||||| || || || ||||| Sbjct 7573221 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7573280 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || | || || ||||| || Sbjct 7573281 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGG 7573340 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || |||||||| || || || || ||| Sbjct 7573341 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACT 7573400 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||| | ||||| ||||| |||||||| Sbjct 7573401 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573447 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || || || || || ||| ||||| || || || ||||| Sbjct 7572081 CCACCACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGAC 7572140 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || || || ||||| || | || || ||||| || Sbjct 7572141 AGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7572200 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||||||||| || || || || || Sbjct 7572201 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACC 7572260 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| || || || || |||||||| Sbjct 7572261 TCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572307 >seq116 Length=4760417 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||||||| ||||| || || ||||| ||||| || || || || || Sbjct 3279202 CCACCACGCAGACGCAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3279143 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || || ||||||||||| || | || || ||||| || Sbjct 3279142 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 3279083 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || |||||||| || || ||||| ||| Sbjct 3279082 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGTTCCACT 3279023 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| ||||||| ||||| || || ||||||||| Sbjct 3279022 TCAAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATT 3278975 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||||||| ||||| || ||||| || ||||| || || || || | Sbjct 3276340 TACCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 3276281 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||| ||||| || | || || ||||| | Sbjct 3276280 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTG 3276221 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || || || ||||| || || || || | Sbjct 3276220 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCCA 3276161 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||||||||||| ||||| || || |||||||| Sbjct 3276160 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276112 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | || || || ||||| ||||| || || || ||||| Sbjct 3279430 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3279371 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||| ||||| || | || ||||| || || Sbjct 3279370 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGTGGA 3279311 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || |||||||| || ||| || || || Sbjct 3279310 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACC 3279251 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||||||||||| ||||| || || |||||||| Sbjct 3279250 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3279204 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||||||||| ||||| || ||||| || ||||| || || || || || Sbjct 3276794 CCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3276735 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || || ||||| ||||| || | || || ||||| || Sbjct 3276734 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276675 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || || ||||| || || || || || Sbjct 3276674 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCAACC 3276615 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| || || |||||||| Sbjct 3276614 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276568 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | || || || || || ||||| || || || || || Sbjct 3277022 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3276963 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || || ||||| ||||| || | || || ||||| || Sbjct 3276962 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276903 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || ||||| ||||| || ||| || || || Sbjct 3276902 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACC 3276843 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||||||||||| ||||| || || |||||||| Sbjct 3276842 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276796 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | || || || ||||| ||||| || || || || || Sbjct 3277250 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3277191 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || || ||||| ||||| || | || || ||||| || Sbjct 3277190 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 3277131 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || ||||| ||||| || ||| || || || Sbjct 3277130 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACC 3277071 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| || || |||||||| Sbjct 3277070 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3277024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822193294922