Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq30 114 3e-20 seq116 102 2e-16 >seq30 Length=7729275 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || ||||| || || ||||| | || || || |||||| Sbjct 7572988 CAGATCTTTGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCGTCTGAC 7572929 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 7572928 ACAATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572869 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||||||| | |||||||| | || || | || |||||| || Sbjct 7572868 CGTCTCATCTTCGCAGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGACTACAACATC 7572809 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||||| ||| | ||| || | || || Sbjct 7572808 CAGAAAGAGTCCACTCTCCACTTGGTTCTGCGTCTGCG 7572771 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || ||||| | || || || || ||| Sbjct 7572760 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 7572701 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 7572700 ACAATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572641 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || || | || |||||| || Sbjct 7572640 CGTCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7572581 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| ||||| ||| Sbjct 7572580 CAGAAAGAGTCCACTCTCCAC 7572560 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || ||||| || || ||||| | || || || || ||| Sbjct 7572532 CAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCAGAC 7572473 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 7572472 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572413 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||||||||| | || || | || |||||| || Sbjct 7572412 CGTCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7572353 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || || ||| Sbjct 7572352 CAGAAAGAGTCCACCCTCCAC 7572332 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || ||| | ||| ||||| ||||||||||||| || ||||||| || || Sbjct 7572771 CGCAGACGCAGAACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 7572830 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| ||||||||||| |||||||| || || || || Sbjct 7572831 CGGCCATCTTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTG 7572874 >seq116 Length=4760417 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || |||||||| || || ||||| | || || || |||||| Sbjct 3275887 CAGATCTTTGTGAAGACACTCACAGGGAAGACCATCACCCTTGAGGTTGAGCCGTCTGAC 3275946 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || || || ||| || Sbjct 3275947 ACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3276006 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||||||||||||||| | || || |||| |||||| || Sbjct 3276007 CGTCTCATCTTCGCTGGGAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 3276066 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| ||||| Sbjct 3276067 CAGAAGGAGTCCACCCTTCATCTTGT 3276092 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| | |||||||| || ||||| | ||| Sbjct 3276355 AAGACCCTGACAGGGAAGACCATCACCCTTGAAGTGGAGCCATCAGACACCATTGAAAAC 3276414 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || | || |||||| Sbjct 3276415 GTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAGCGTCTCATCTTC 3276474 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || |||| |||||| ||||||| |||||| Sbjct 3276475 GCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCT 3276534 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||| || | || || Sbjct 3276535 ACCCTCCACTTGGTTCTGCGTCTGCG 3276560 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || |||||| | || || || |||||||| | || Sbjct 3276811 AAGACCCTGACAGGCAAGACCATCACTCTTGAGGTTGAGCCATCTGACACCATTGAGAAT 3276870 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || | || |||||| Sbjct 3276871 GTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAGCGTCTCATCTTC 3276930 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || |||| |||||| ||||||| ||||| Sbjct 3276931 GCTGGGAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCC 3276990 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 3276991 ACCCTTCATCTTGT 3277004 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| | ||||||||| || ||||| | ||| Sbjct 3278991 AAGACCCTGACAGGGAAGACCATCACCCTTGAAGTGGAACCATCAGACACCATTGAAAAC 3279050 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || | || ||||| Sbjct 3279051 GTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTCATCTTT 3279110 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || |||| |||||| ||||||| || || Sbjct 3279111 GCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAATCC 3279170 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||| || | || || Sbjct 3279171 ACCCTCCACTTGGTTCTGCGTCTGCG 3279196 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| | || || || |||||||| | || Sbjct 3277039 AAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCATCTGACACCATTGAGAAT 3277098 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || | || |||||| Sbjct 3277099 GTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGCGTCTCATCTTC 3277158 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || |||| |||||| ||||||| || || Sbjct 3277159 GCTGGGAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAATCC 3277218 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 3277219 ACCCTTCATCTTGT 3277232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| | || || || || ||||| | || Sbjct 3276583 AAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCATCAGACACCATTGAGAAC 3276642 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || || ||| || | || |||||| Sbjct 3276643 GTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAGCGTCTCATCTTC 3276702 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || |||| |||||| ||||||| |||||| Sbjct 3276703 GCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCT 3276762 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||| || | || || Sbjct 3276763 ACCCTCCACTTGGTTCTGCGTCTGCG 3276788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181814773452558