Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq30 109 5e-19 seq116 95.1 1e-14 >seq30 Length=7729275 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||||| | | | ||||| || || ||||||||||| || ||| Sbjct 7573454 ACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7573513 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| |||||||| || ||||| || ||||| Sbjct 7573514 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7573573 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | || | || |||| ||||| || |||| Sbjct 7573574 TTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAACCTCGAG 7573633 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || ||||||||||| || || | || ||||||||| Sbjct 7573634 GGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 7573676 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | | |||||||| || ||||||||||| || ||| Sbjct 7572314 ACGCAGACGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 7572373 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| || ||||| || ||||| Sbjct 7572374 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7572433 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | ||| | || || | ||||| || |||| Sbjct 7572434 TTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACCTCGAG 7572493 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| ||||| | ||| ||||||||| Sbjct 7572494 GGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 7572536 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||||| | | | ||||| || || ||||||||||| || ||| Sbjct 7573226 ACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7573285 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| |||||||| || ||||| || ||||| Sbjct 7573286 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7573345 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | ||| | || || | ||||||||||| | Sbjct 7573346 TTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAG 7573405 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | || ||||||||| Sbjct 7573406 GGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573448 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | |||||||| || ||||||||||| || ||| Sbjct 7572542 ACGCAGACGCAGGACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 7572601 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| |||||||| || ||||| || ||||| Sbjct 7572602 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7572661 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | ||| | || |||| ||||| || |||| Sbjct 7572662 TTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATTGTGTCGGATGGCTCAACCTCGAG 7572721 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | || ||||||||| Sbjct 7572722 GGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 7572764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | |||||||| || ||||||||||| || ||| Sbjct 7572770 ACGCAGACGCAGAACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 7572829 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| || ||||| || ||||| Sbjct 7572830 GCGGCCATCTTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7572889 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | || | || || | |||||| || |||| Sbjct 7572890 TTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATTGTGTCAGACGGCTCAACCTCGAG 7572949 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| ||||| | || ||||||||| Sbjct 7572950 GGTGATGGTCTTGCCTGTCAGGGTTTTGACAAAGATCTGCATG 7572992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||||| | | | ||||| || || ||||||||||| || ||| Sbjct 7571858 ACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7571917 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| || ||||| || ||||| Sbjct 7571918 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7571977 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | ||| | || || | ||||||||||| | Sbjct 7571978 TTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCCACTTCTAG 7572037 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | || ||||||||| Sbjct 7572038 GGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7572080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | | ||| || || ||||||||||| || ||| Sbjct 7572998 ACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGT 7573057 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || |||| | |||| |||||||| || ||||| || ||||| Sbjct 7573058 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7573117 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | ||| | || || | ||||||||||| | Sbjct 7573118 TTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAG 7573177 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || || | || ||||||||| Sbjct 7573178 GGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573220 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | |||||||| | | | || || || ||||||||||| || ||| Sbjct 7572086 ACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGACAGGGT 7572145 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| || ||||| || ||||| Sbjct 7572146 GCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7572205 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || || | | ||| | || || | ||||| || |||| Sbjct 7572206 TTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACCTCGAG 7572265 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| ||||| | ||| ||||||||| Sbjct 7572266 GGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 7572308 >seq116 Length=4760417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 3276561 ACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3276502 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || || | |||| |||||||| || ||||| || ||||| Sbjct 3276501 GCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCC 3276442 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | ||| | || || | ||||||||||| | Sbjct 3276441 CTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCAAG 3276382 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| || || | ||| |||||||| Sbjct 3276381 GGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 3276333 ACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3276274 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| || ||||| || ||||| Sbjct 3276273 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCC 3276214 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | |||||||| || | Sbjct 3276213 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCCACCTCAAG 3276154 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 3276153 GGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3276111 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | | || || || || |||||||||||| || ||| Sbjct 3279197 ACGCAGACGCAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 3279138 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || || | | |||| |||||||| || ||||| || ||||| Sbjct 3279137 GCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 3279078 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | ||| | || || | || |||||||| | Sbjct 3279077 CTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGTTCCACTTCAAG 3279018 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| || || | ||| |||||||| Sbjct 3279017 GGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3278976 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 3276789 ACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3276730 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || || | |||| |||||||| || ||||| || ||||| Sbjct 3276729 GCGGCCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCC 3276670 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||| || || | Sbjct 3276669 CTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCAACCTCAAG 3276610 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||| || || | ||| ||||||||| Sbjct 3276609 GGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3276567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608828859280