Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq211 96.9 1e-16 seq95 96.9 1e-16 >seq211 Length=3181262 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 996565 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 996508 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1130239 TAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 1130296 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||||||| |||||||||||||||| || ||| Sbjct 998049 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTTAAGGTCCCTGGTTCAATCCAGGG 997992 Score = 80.6 bits (88), Expect = 8e-12 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 2782 AGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||| | |||||||||||||||||||||||||||||||| |||||| Sbjct 987281 AGTTGGGAGATCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 987230 Score = 78.8 bits (86), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 |||||||||||||||||| |||| || |||| ||||||||||||||||||| |||| Sbjct 1144703 TAGCTCAGTTGGGAGAGCGTTAGCCTCAAGACCTAAAGGTCCCTGGTTCAATCCCG 1144648 >seq95 Length=1152674 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 919307 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 919364 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 990129 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 990186 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 993226 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 993283 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 994751 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 994808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849531004710