Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq263 143 3e-29 >seq263 Length=525514 Score = 143 bits (158), Expect = 3e-29 Identities = 140/178 (79%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 |||||| || || | |||||| | |||||| || || || ||||||||||| |||||||| Sbjct 160630 CTTAAGACCTGTGATGTGGGCTATCATGTAAGTCAGGAGTGAGTAGCTGGCGATGTTGAA 160689 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || || || ||| |||| ||||| | |||||||||||| ||||| || || |||| Sbjct 160690 GGGTACGCCAAGCCCCGTGTCTCCCGAACGCTGGTACAGCTGACACGACAGTTCTCCGTT 160749 Query 147102 GGCCACGTAAAACTGG-CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||| |||||| || ||| |||||| || ||||||||||| |||||||| Sbjct 160750 ACACACGTAGAACTGGACAAAGG-CGTGGCAGGGGGGCAGCGCCATCTTAGGCAGGTC 160806 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| ||||||||||||||||| || || || || ||||| || || ||| Sbjct 162829 GCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCCTCCTCGTAGTG- 162887 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | || || | ||||| || || || ||| |||| ||| ||||||||| || Sbjct 162888 GCTCAGTCCAC--GCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCAGATGTGTACC 162945 Query 147400 CCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCC 147459 ||| ||||||| ||||| | || ||||||||| ||||| | |||||||| Sbjct 162946 TTTTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAAGAGCTCCTCG 163005 Query 147460 AAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTG 147506 ||||| ||||| || || | ||| || ||||||||||||||||| Sbjct 163006 GCTACCCCTCTCCAGAACACACGCTTTGTAGTCAGCAGGGGGAACTG 163052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583485097147200