Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq211 116 5e-21 >seq211 Length=3181262 Score = 116 bits (128), Expect = 5e-21 Identities = 321/485 (66%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 |||| || || || ||||||||| ||| || ||||| || ||| |||||||| |||| Sbjct 2897832 TCTATCAAGCGTCTACCAGTGAGATGTTCGGCTTGGTGCAGGAGGTCCCACAGAAGGAAA 2897891 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 | || || ||||| || ||||||| ||||| | || || || |||| || ||||| | Sbjct 2897892 CCACGCCATTCTATCCCAGATCTCCTTATGGAGCGGCCAAGCTGTATGCTTACTGGATAG 2897951 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 | ||| ||||||||| || ||| ||| ||| || || ||||||||||| | Sbjct 2897952 TGGTGAATTACAGAGAGGCCTACAACATGTTTGCCTGTAACGGCATCCTATTCAACCACG 2898011 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTA 161552 || || || | || || || ||||| ||| | ||||| || | || | | | | Sbjct 2898012 AGAGTCCTAGAAGAGGGGAAACCTTCGTTACCAGGAAGATCACCCGAGGTGT-TGCTAAA 2898070 Query 161553 TTAGTACAGGAC-TACAGGATTGTCTATACCTAGGTAATCTAAACTCA-AGACGAGATTG 161610 || | | || | | || || || || || || | || ||| | ||||| Sbjct 2898071 ATACTGCTGGGCATTCAAACCGAAGTAGTGCTGGGGAACCTCGATGCACAGA-GGGATTG 2898129 Query 161611 GGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGA 161670 ||| |||||| |||||||||| ||| |||||| ||||| | || || | || || Sbjct 2898130 GGGGCATGCTAAAGACTATGTCAGGGCCATGTGGCTGATGCTGCAGTGTGAGAAACCGGA 2898189 Query 161671 TGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTG--AAGGACTTTGTAGAGGCATCT 161728 |||| ||| || | ||||| || || | ||||| | ||| ||||| |||||| Sbjct 2898190 AGACTTTGTAATATCTACAGG--AACGGTGTACAGTGTAAGGGAATTTGTCATGGCATCA 2898247 Query 161729 GCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTGAAGGATTGGATGAAGTGGGTATA 161788 | | | |||| || | ||| ||| | ||| |||| || || || || |||| | Sbjct 2898248 TTTAAGCATATTGGGGTGGATATTATCTGGGAAGGTAAAGGGTTAGAAGAGGTTGGTAAA 2898307 Query 161789 GATAG 161793 || || Sbjct 2898308 GACAG 2898312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729925968600240