Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq6 129 8e-25 >seq6 Length=9188263 Score = 129 bits (142), Expect = 8e-25 Identities = 191/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 213953 CAGCACCAGTTGCGTCTGTTCAAGGACGGTAAAATGAAGTACCAGATTATTGACGGGGAA 214012 |||||||| | || ||| ||||||| ||| ||||||||||| | | ||||||||| Sbjct 3712647 CAGCACCAACTCCGCAGCTTCCAGGACGGGAAACTGAAGTACCAGCTGGTGGACGGGGAA 3712706 Query 214013 GTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTTACGAACCCAGCGTTCCC 214072 || | ||| || | | | |||| |||| || || ||| ||||| |||| || ||| Sbjct 3712707 GTGTTCCCGCCCAGCCTGCAGGACGCCCCTGTACACATGATTTACCCTCCCAATGTCCCC 3712766 Query 214073 GAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTG 214132 || | || ||||| || || ||||| | || || | |||| || | | ||| Sbjct 3712767 GAGGACAAGCGATTCGCCCTCGGGCACGAGTTCTTCGGCCATCTGCCGGGACTGTTCGTG 3712826 Query 214133 TACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCAC 214192 | |||| |||||||||| ||||||||| |||| || ||||| |||| | | ||| Sbjct 3712827 TGGGCCACGGTCTGGCTGAGGGAGCACAACCGGGTCTGTGACGTCATGAAGAAGGTCCAC 3712886 Query 214193 CCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 || || ||| ||||||||| || ||||||| Sbjct 3712887 CCAGACTGGGACGACGAACGACTCTTCCAGA 3712917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723337201379520