Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq82 114 4e-20 seq201 113 1e-19 seq154 113 1e-19 seq259 100 9e-16 seq151 87.8 6e-12 >seq82 Length=929508 Score = 114 bits (126), Expect = 4e-20 Identities = 392/593 (66%), Gaps = 26/593 (4%) Strand=Plus/Minus Query 443283 TTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGTGGCCCAGTTTTG 443341 || ||| | ||| | | |||||||| |||||||||| | | | || || || || Sbjct 24051 TTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCC-GTAGCATCATTCTG 23993 Query 443342 GACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAG 443401 ||| | |||||| ||||||||||||||||||||| ||||| | || | || | Sbjct 23992 GACAACGGAGGAAGTTGATCTCTCCAAGGACTTGGAGCATTGGGA-GA--GTCTGAATGA 23936 Query 443402 CCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGT 443461 | | ||| | ||| ||||| | || |||| ||||||||| | || ||||||||||| Sbjct 23935 CAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATCGT 23876 Query 443462 CGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTT 443521 | ||| |||||||| | | ||| | || ||| | || |||||| | | ||| Sbjct 23875 CAATGAAAATCTGGTAGAGAGATTCACCAAAGAGGTGCAGGTGACTGAGGCCAGGTGCTT 23816 Query 443522 CTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAA 443581 ||| | ||||| || || |||||||| || | || | ||||||| || ||| | Sbjct 23815 CTATGGCTTCCAGATTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTAATCGA 23756 Query 443582 GACACTAATTCCGAACGA---AGACGA-ACAGCGGTCCATCTTCTCA---TCGTTCATGA 443634 || ||| | ||| || | || | |||| ||| | ||| | || | || Sbjct 23755 CAC-CTACGT--GAAGGATCCGCATGAGAGAGCG---CATTTGTTCAGTGCCATTGA-GA 23703 Query 443635 CCACGCCAGGCATCACTGAA-AAGACTCGCTGGGCAAAACAGTGGCTCG--AACGAGAAA 443691 ||| || | | || || ||| || |||||| | ||||| || |||||||| Sbjct 23702 CCATACCTTGTGT-ACAAAAGAAGGCTGACTGGGCCCTAAAGTGGACCGGAGACGAGAAA 23644 Query 443692 ATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCG 443751 | | || | || || |||| || ||||| | || ||||| | || ||| | Sbjct 23643 A--GTACTTTTGGGGATCGTGTAGTTGCGTTTGCCGCTGTGGAAGGGATCTT-TTTCTCT 23587 Query 443752 GCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTT 443811 | || || || | ||||| ||||||| ||| | || || |||| ||| ||||| || Sbjct 23586 GGGGCCTTCGCAGCAATCTTTTGGTTGAGGAAGAGAGGGCTCATGCCCGGGCTGACTTTC 23527 Query 443812 AGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 || || ||||||||| | ||||||||| |||| |||||| |||||||| Sbjct 23526 TCAAATGAGCTGATCAGTAGAGACGAGGGTCTGCACACCGACTTTGCCTGTCT 23474 >seq201 Length=905327 Score = 113 bits (124), Expect = 1e-19 Identities = 397/604 (66%), Gaps = 22/604 (4%) Strand=Plus/Plus Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGT 443329 || |||||| | || ||| | ||| | | |||||||| ||||||||| | | | || Sbjct 812827 CGCTTCGTCATTTTTCCCATCCAGTACCACGACATCTGGCGCATGTACAAGAAGGCC-GT 812885 Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 || || ||||| | |||||| |||||||||| ||||||||||| ||||| | || Sbjct 812886 AGCATCATTCTGGACAACGGAGGAAGTTGATCTCTCTAAGGACTTGGCGCATTGGGA-GA 812944 Query 443390 ACGACTATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAG 443449 | || | | | ||| | ||| ||||| | || |||| ||||||||| | || Sbjct 812945 --GTCTGAATGACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAG 813002 Query 443450 CGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGA 443509 ||||||||||| ||| |||||||| | | ||| | || ||| | || || Sbjct 813003 TGACGGTATCGTTAATGAAAATCTGGTTGAGAGATTCACCAAAGAGGTGCAGGTGACTGA 813062 Query 443510 GGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAG 443569 || | | |||||| | ||||| ||| || |||||||| || | || | ||||| Sbjct 813063 GGTAAGGTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCATTCTGAAATGTACAG 813122 Query 443570 TCAGTTGATCAAGAC--AC-TAA---TTCCGAACGAAGACGAACAGCGGTCCATCTTCTC 443623 || || ||| | || || | | |||| | ||| || || | || || | | Sbjct 813123 TCTCTTAATCGACACCTACGTGAAGGATCCGCATGAAAGAGAGCATCTGTTCA--GTGCC 813180 Query 443624 ATCGTTCATGACCACGCCAGGCATCACTGAAAAGACTCGCTGGG-CAAAACAGTGGCTCG 443682 || | ||||| || | | | | ||| || ||||| | | | | | | Sbjct 813181 ATTG----AGACCATACCTTGTGTAAAGAAGAAGGCTGACTGGGCCCTTAGATGGAGTGG 813236 Query 443683 A-ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTG 443741 | ||||||||| || | || | ||| || | || || ||||||| || ||||| | Sbjct 813237 AGACGAGAAAA-CT-ACTTTTGGCGATCGTGTGGTTGCGTTTGCTGCTGTGGAAGGGATA 813294 Query 443742 TTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGG 443801 || ||| | | || || || | || |||||||||| || | |||||||||| || Sbjct 813295 TT-TTTCTCCGGGGCCTTCGCAGCAATTTTCTGGTTGAGGAAAAGAGGACTTATGCCGGG 813353 Query 443802 TCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 ||||| || ||| || ||||||||| | ||||||||| |||| |||||| ||||| Sbjct 813354 GCTGACTTTCTCTAATGAGCTGATCAGTAGAGACGAGGGTCTGCACACCGACTTTGCCTG 813413 Query 443862 TCTT 443865 |||| Sbjct 813414 TCTT 813417 >seq154 Length=781518 Score = 113 bits (124), Expect = 1e-19 Identities = 127/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 |||||||| |||||| || ||||| || || | || || || |||| || ||| Sbjct 49973 CAGCTTCGGCGAGCGGCTGGTCGCCTTCGCAGCCGTGGAGGGCGTGTTCTTCTCAGGCT- 50031 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || || ||||||||||| |||| || || || || |||| ||| |||||||| || Sbjct 50032 CGTTCGCTGCCATCTTCTGGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCTCTA 50091 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 ||||||| || ||||| |||||||| ||||| ||||| || ||||| || Sbjct 50092 ACGAACTAATTAGTCGTGACGAGGGCTTGCACTGCGAGTTTGCCTGCCT 50140 >seq259 Length=546029 Score = 100 bits (110), Expect = 9e-16 Identities = 215/317 (68%), Gaps = 7/317 (2%) Strand=Plus/Minus Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGT 443329 || |||||| | || ||| | ||| | | |||||||| |||||||||| | | | || Sbjct 378364 CGCTTCGTCATTTTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCC-GT 378306 Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 || || ||||| | |||||| |||||||||| ||||||||||| ||||| || Sbjct 378305 AGCATCATTCTGGACAACGGAGGAAGTTGATCTCTCTAAGGACTTGGCGCATTGG---GA 378249 Query 443390 ACGACTATCTAGCCATGAACGCGATTTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAG 443449 |||| | | | ||| | ||| ||||| | || |||| ||||||||| | || Sbjct 378248 GAGACTGAATGACAACGAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAG 378189 Query 443450 CGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGA 443509 |||||||| ||| ||| |||||||| | | ||| | || ||| | || || Sbjct 378188 TGACGGTATAGTCAATGAAAATCTGGTTGAGAGATTCACCAAAGAGGTGCAGGTGACTGA 378129 Query 443510 GGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAG 443569 ||| | | |||||| | ||||| || || |||||||| || | || | ||||| Sbjct 378128 GGCAAGGTGCTTCTATGGCTTCCAGATAGCCATTGAGAACATCCATTCTGAAATGTACAG 378069 Query 443570 TCAGTTGATCAAGACAC 443586 || || ||| ||||| Sbjct 378068 TCTCTTAATC--GACAC 378054 >seq151 Length=1829068 Score = 87.8 bits (96), Expect = 6e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| |||| ||| | || || |||| |||||||| || ||||| |||||| Sbjct 1482668 ATCTTCTGGCTGAAGAAGAGAGGTCTGATGCCTGGTCTGACGTTCTCCAACGAGCTGATC 1482727 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 || | |||||||||||||| || ||||||||||| || Sbjct 1482728 AGCAGAGACGAGGGTTTGCACTGTGACTTCGCCTGCCT 1482765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588327900479110