Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq183 100 4e-16 seq82 100 4e-16 seq259 96.9 4e-15 seq201 96.9 4e-15 seq115 91.5 2e-13 seq209 87.8 2e-12 >seq183 Length=676410 Score = 100 bits (110), Expect = 4e-16 Identities = 289/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||| ||||||||||||||||||||| || || || |||||| ||||| Sbjct 152238 TACTCTCCCACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 152179 Query 122431 AAGTCAAATGGATTCTTCGC-GTTCCAAATGGGTGGCACCCCA--ACTTGTTTGAGGAGA 122487 || ||||| || |||| ||| ||| ||| | | | | || | || | || || Sbjct 152178 AAATCAAAGGGGTTCT-CGCTGTTGTAAA--GCTTACTGCACACGAGTTCTCCCAGCAGC 152122 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT- 122546 | || | ||| |||| ||||||| |||| || ||||| || || | || Sbjct 152121 CTGTCTGCGACAAACTCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAACTTC 152062 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 ||| || || || ||| | |||| ||| |||||||| ||| || || | | || Sbjct 152061 ACA-GGAAGAGCTTCCGTTAGGAACTCTTGCTCAATCTTAACAGCATCGTCGATAATCTG 152003 Query 122607 GTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 ||| || || | | | | | || |||| || ||| | |||||| | Sbjct 152002 GTGAATGAGCTCCTG-ACTAGGCTTATTGATCAGGTAGCTGACCATAAGACAGGCAAAGT 151944 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| |||||||| |||| || || ||||||||||| || || ||||||| Sbjct 151943 CGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCCGGGCATGA 151884 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 | || | |||| ||||||| |||| || ||| | ||||||||| ||||| || |||| Sbjct 151883 GTCCTCTCTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAAGATCCCTTCCA 151824 Query 122786 CACACGCAAACGCAA 122800 || |||||||||| Sbjct 151823 CAGCGGCAAACGCAA 151809 >seq82 Length=929508 Score = 100 bits (110), Expect = 4e-16 Identities = 278/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 122386 TTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTC 122445 |||||||||||||||||||| || || || |||||| ||||| |||||||| || ||| Sbjct 23207 TTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTC 23266 Query 122446 TTCGC-GTTCCAAATGGGTGGCACCCCA--ACTTGTTTGAGGAGACGATCCGACACATAC 122502 | ||| ||| ||| | | | | || | || | || || | ||| | ||| || Sbjct 23267 T-CGCTGTTGTAAA--GCTTACTGCACATGAGTTCTCCCAGCAGCCTATCTGCGACAAAC 23323 Query 122503 TCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACATGGGAGTGCGTC 122561 || ||||||| |||| || ||||| || || || || ||| || || || || Sbjct 23324 TCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCTTCACA-GGAAGAGCTTC 23382 Query 122562 CAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGT 122621 | | |||| ||| |||||||| ||| || || | | || ||| || || Sbjct 23383 CGTCAGGAACTCTTGCTCAATCTTAACAGCATCGTCGATAATCTGGTGAATGCGCTCCTC 23442 Query 122622 AGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTC 122681 | | || |||| || ||| | | |||||| || ||| |||||||| Sbjct 23443 ACTAGGCTTATTGATCAGGTAGCTGACCATCAGACAGGCAAAGTCGGTGTGCAGACCCTC 23502 Query 122682 ATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAA 122741 |||| || || ||||||||||| || || |||||||| || | |||| |||| Sbjct 23503 GTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCCGGGCATGAGCCCTCTCTTCCTCAA 23562 Query 122742 CCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAA 122800 |||| | || || ||| | ||| ||||| ||||| || |||||| |||||||||| Sbjct 23563 CCAAAAGATTGCTGCGAAGGCCCCAGAGAAAAAGATCCCTTCCACAGCGGCAAACGCAA 23621 >seq259 Length=546029 Score = 96.9 bits (106), Expect = 4e-15 Identities = 286/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| |||| ||||||||||||||||||||| || || || |||||| ||||| Sbjct 365088 TACTCCCCCACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 365147 Query 122431 AAGTCAAATGGATTCTTCGC-GTTCCAAATGGGTGGCACCCCA--ACTTGTTTGAGGAGA 122487 |||||||| || |||| ||| ||| ||| | | | | || | || || || Sbjct 365148 AAGTCAAAGGGGTTCT-CGCTGTTGTAAA--GCTTACTGCACATGAGTTCCCCCAGCAGC 365204 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547 | ||| | ||| |||| ||||||| |||| || ||||| || || || | Sbjct 365205 CTATCTGCGACAAACTCGATGTACTGTTTCATCAGGTCTTGATTCATCCCAATCAGCCT- 365263 Query 122548 CATGGGA-GTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 || |||| | || ||| | |||| || |||||||| ||| || || | | || Sbjct 365264 CACGGGAAGAGCTTCCGTCAGGAACTTTTGCTCAATCTTAACAGCATCGTCAATAATCTG 365323 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 ||| || || | | || |||| || | ||| | |||||| || Sbjct 365324 GTGAATGCGCTCCTCACTAGGCTTATTGATCAGATAGCTGACCATAAGACAGGCAAAGTC 365383 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 ||| |||||||| |||| || || ||||| ||||| || ||||||||||| Sbjct 365384 GGCGTGCAGACCCTCGTCTCTACTGATCAGCTCATTGGAGAAAGTCAGCCCTGGCATGAG 365443 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 || | ||| ||||||| |||| || ||| | ||||||||| || || || ||||| Sbjct 365444 TCCTCTTTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAATATCCCTTCCAC 365503 Query 122787 ACACGCAAACGCAA 122800 | |||||||||| Sbjct 365504 AGCGGCAAACGCAA 365517 >seq201 Length=905327 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | ||| ||||| || | |||| | ||| || || || | |||| |||| Sbjct 244814 GTGTACTCCACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTGCCGAGGTTCTGTTGG 244755 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 ||| ||| ||||||| ||||||||||| ||||||||||| | || ||||||||||| Sbjct 244754 TTAGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGGTTTCCTGTCTCCGTCTGG 244695 Query 111398 GATTTGAGAATAGCCTTCCAAAC 111420 | | || ||||| | ||| || Sbjct 244694 GCCTCGATGATAGCATACCACAC 244672 >seq115 Length=5728022 Score = 91.5 bits (100), Expect = 2e-13 Identities = 253/382 (66%), Gaps = 6/382 (2%) Strand=Plus/Minus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 |||||||||| || || ||||||||||| ||| ||||| ||||| | || Sbjct 3214929 TCTATCAAGCGTCGTCGAGTGAGATGTTTGGCTTGGTGCAGGAGGTGCCACAGAGGGAAA 3214870 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 ||||| ||||||||| | || ||| |||| | || | || | ||| | | Sbjct 3214869 CCACACCATTCTACCCAAGGTCACCCTATGGAGCAGCTAAACTGTACGCTTACTGGGTTG 3214810 Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339 | || ||| | || | |||| ||||||| || ||| |||||||||||||| | Sbjct 3214809 TGGTGAACTACAGGGAAGCCTACGACATGTTTGCCTGTAACGGTATCCTCTTCAACCACG 3214750 Query 9340 AATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACC-GAGGG-TATCAAACA 9397 | || | | || | | |||||| |||| |||||| ||| ||||| | | || Sbjct 3214749 AGAGTCCACGGAGGGGGGAAACCTTTGTCACCAGGAAGATCACCCGAGGGGTGGCCAA-- 3214692 Query 9398 AATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 ||| || |||| | | | |||| | |||| ||| | | || | |||| || Sbjct 3214691 AATTCTGCTGGGTCAGCAAAACCACATTACACTGGGGAACCTGGATGCTAAACGAGACTG 3214632 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-G 9516 ||| || |||||||||||||| |||| |||||| | ||||| || || || |||||| | Sbjct 3214631 GGGACATGCGAAGGACTATGTCAAAGCCATGTGGTTGATGCTACAGCATGA-GAAGCCAG 3214573 Query 9517 ACGAATATGTAGTAGCAACGGG 9538 | || | ||| |||| || || Sbjct 3214572 AGGACTTTGTTATAGCCACAGG 3214551 >seq209 Length=3175921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| |||| || || ||||||||||| || || Sbjct 1714146 GGCAAAGTCGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCC 1714205 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || | |||| |||||||| | || || ||| | ||| ||||| ||||| Sbjct 1714206 GGGCATGAGCCCTCTCTTCCTCAACCAAAAGATTGCTGCGAAGGCCCCAGAGAAAAAGAT 1714265 Query 122778 ACCCTCCACACACGCAAACGCAA 122800 || |||||| |||||||||| Sbjct 1714266 CCCTTCCACAGCGGCAAACGCAA 1714288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028875540800