Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq30 150 5e-31 seq116 149 2e-30 seq183 116 1e-20 seq43 95.1 4e-14 seq224 91.5 4e-13 seq72 91.5 4e-13 seq37 91.5 4e-13 seq22 91.5 4e-13 >seq30 Length=7729275 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| | || ||||| |||||||| || || || || || Sbjct 7572761 CATGCCACCACGCAGACGCAGAACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 7572820 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||||||||| || ||||| || ||||| ||||| ||||| || || Sbjct 7572821 AGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGGTCTGG 7572880 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || || || || || || || ||||| || || | ||||| || || Sbjct 7572881 GGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATTGTGTCAGACGGCTC 7572940 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 7572941 AACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACAAAGATCTGCAT 7572991 >seq116 Length=4760417 Score = 149 bits (164), Expect = 2e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||||||||| || || || || || || || || ||||| Sbjct 3279430 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3279371 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| || || || ||||| ||||| ||||| |||||||| || ||| Sbjct 3279370 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGTGGA 3279311 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || || || || || || || || ||||| | |||||||| ||||| Sbjct 3279310 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACC 3279251 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 3279250 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3279204 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || ||||||||||| || ||||| || || || || || || Sbjct 3276114 CATGCCACCACGCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 3276055 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| | || || ||||| ||||| ||||| ||||| || || Sbjct 3276054 GGACAGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGG 3275995 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || ||||| || || || ||||| | ||||| || || Sbjct 3275994 GGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCAGACGGCTC 3275935 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | ||||| || || ||||| || ||||| |||||||| Sbjct 3275934 AACCTCAAGGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAGATCTGCAT 3275884 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || ||||||||||| || ||||| || || || || || || Sbjct 3277026 CATGCCACCACGCAGACGCAGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 3276967 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| | || || ||||| ||||| ||||| ||||| || || Sbjct 3276966 GGACAGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGG 3276907 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || ||||| ||||| | |||||||| || Sbjct 3276906 TGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTC 3276847 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || | ||||| || || || || || || || |||||||| Sbjct 3276846 AACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276796 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || ||||||||||| || || || || || || || || || || Sbjct 3277250 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3277191 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| | || || ||||| ||||| ||||| ||||| || || || Sbjct 3277190 AGGGTGCGGCCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 3277131 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || || || || || || ||||| ||||| | |||||||| ||||| Sbjct 3277130 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACC 3277071 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 3277070 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3277024 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || |||||||| || || || || || || Sbjct 3276342 CATACCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 3276283 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| ||||| ||||| ||||| || || Sbjct 3276282 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGG 3276223 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || ||||| | || ||||| || Sbjct 3276222 TGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTC 3276163 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 3276162 CACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276112 Score = 125 bits (138), Expect = 2e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| | || || || || || || || || || || || Sbjct 3279206 CATGCCACCACGCAGACGCAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 3279147 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| | || || ||||||||||| ||||| ||||| || || Sbjct 3279146 GGACAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGG 3279087 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || ||||| | || |||||||| Sbjct 3279086 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGTTC 3279027 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || | ||||| || || || || || || || ||||||||| Sbjct 3279026 CACTTCAAGGGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATT 3278975 >seq183 Length=676410 Score = 116 bits (128), Expect = 1e-20 Identities = 282/427 (66%), Gaps = 0/427 (0%) Strand=Plus/Minus Query 223703 GCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCA 223762 ||||| || || || | |||| ||||| || | |||||||| || || | || Sbjct 151950 GCAAAGTCGGTGTGCAGACCCTCGTCTCTACTGATCAGCTCATTTGAGAAAGTCAGCCCG 151891 Query 223763 GGCATTAAACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATA 223822 ||||| | |||||||| ||| ||| || ||||| || || || || ||||| || Sbjct 151890 GGCATGAGTCCTCTCTTCCTCAACCAGAAAATTGCTGCGAAGGCCCCGGAGAAAAAGATC 151831 Query 223823 CCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCTTTGTCTCCTATC 223882 ||||| ||| |||||||| || | || ||||| | | | |||||| || Sbjct 151830 CCTTCCACAGCGGCAAACGCAACCACACGCTCCCCAAAAGTGCTTTTCTCGTCTCCGGTC 151771 Query 223883 CATTTTAATGCCCAATCTGCTTTTTTCTTAATACAAGAAAAATTTTCTAAAGCATTAAAC 223942 || |||| ||||| || || || ||||| | ||||| | | || | ||||| || Sbjct 151770 CACTTTAGGGCCCAGTCAGCCTTCTTCTTTACACAAGGCATGGTCTCAATTGCATTGAAT 151711 Query 223943 AACTTCGATTTCTCATTATGATCACTTATATATGTTTCTATTAATTGACTATACATTATT 224002 | | | | |||||| |||| | | || || || ||||| |||| |||||| Sbjct 151710 AGATGCTCTCTCTCATGCGGATCCTTCACGTAGGTGTCGATTAAGAGACTGTACATTTCA 151651 Query 224003 GAATGTATATTTTCCATTGCTATTTGAAATCCATAAAATGCTTTTGCCTCTGCTATTTGT 224062 ||||| || || || || || || || || ||||| || | |||| | | || Sbjct 151650 GAATGGATGTTCTCAATGGCAATCTGGAAGCCATAGAAGCACCTAACCTCGGTCACCTGC 151591 Query 224063 ACTTCTGTCATAAATCTTAATCCTAAATTCTCTAATACTATACCATCACTTGCCGCAAAA 224122 || ||| | |||||||| | | | |||||| || ||||||||||| || ||||| Sbjct 151590 ACCTCTTTAATAAATCTCTCTGCCAGATTCTCATTGACGATACCATCACTAGCTGCAAAG 151531 Query 224123 AATGCCA 224129 ||||||| Sbjct 151530 AATGCCA 151524 >seq43 Length=1844796 Score = 95.1 bits (104), Expect = 4e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 235886 ATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATC 235945 ||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| Sbjct 1402966 ATAAGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATC 1403025 Query 235946 AAAACCCAGCATCTCCA 235962 | |||| ||||||||| Sbjct 1403026 GATACCCTGCATCTCCA 1403042 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1389222 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1389163 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1389162 CCCTGCATCTCCA 1389150 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1394373 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1394314 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1394313 CCCTGCATCTCCA 1394301 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1398555 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1398496 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1398495 CCCTGCATCTCCA 1398483 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1399942 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1400001 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1400002 CCCTGCATCTCCA 1400014 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1404804 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1404863 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1404864 CCCTGCATCTCCA 1404876 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1405502 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1405561 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1405562 CCCCGCATCTCCA 1405574 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1398244 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1398185 Query 235950 CCCAGCATCTCCA 235962 ||| |||| |||| Sbjct 1398184 CCCTGCATTTCCA 1398172 >seq224 Length=2258914 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1816776 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 1816717 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1816716 CCCTGCATCTCCA 1816704 >seq72 Length=911216 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 614758 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 614699 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 614698 CCCCGCATCTCCA 614686 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 617615 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 617556 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 617555 CCCTGCATCTCCA 617543 >seq37 Length=6811162 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 3142811 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 3142870 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 3142871 CCCCGCATCTCCA 3142883 >seq22 Length=2626881 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 530854 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATA 530913 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 530914 CCCTGCATCTCCA 530926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246673149594