Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq99 158 1e-33 seq259 138 1e-27 seq201 111 2e-19 >seq99 Length=2803933 Score = 158 bits (174), Expect = 1e-33 Identities = 572/878 (65%), Gaps = 39/878 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| || | ||| | |||| ||||| || | | ||||||||| Sbjct 2309010 TTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 2309069 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | ||||| |||| ||| | |||| || | ||||||| | || ||| || || Sbjct 2309070 ACAACGGAGGAAGTTGATCTCTCTAAAGACTTGGCGCATTGGGAGAGACTGAATGACAAC 2309129 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 || | || |||||||| |||||||| ||||| || || ||||| || || || | Sbjct 2309130 GAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATAGTCAAT 2309189 Query 59742 GAAAATATAGACATGAACTTTTC--CAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 |||||| | | |||| ||| ||| || || ||| | | ||||| ||| |||| Sbjct 2309190 GAAAATCTGGT--TGAAAGATTCACCAAAGAGGTGCAGGTGACTGAGGCAAGGTGCTTCT 2309247 Query 59800 ACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATA 59859 | | | ||| || ||| ||||| || || | |||| ||| | ||||| | Sbjct 2309248 ATGGCTTCCAGATTGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTAATCGACA 2309307 Query 59860 AGTTGGTCAAGGATCCG---GAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCC 59916 | || ||||| ||| ||| ||| || | ||||| ||||||| ||||| | Sbjct 2309308 CCTACGTGAAGGAGCCGCGTGAA-AGAGAGCA--TTTGTTCAGTGCCATTGAGACCATAC 2309364 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT--GAGTCCTGGAGCAT-CAT 59973 | || | | || || || |||||| || ||||||| ||| | ||| || | | Sbjct 2309365 CGTGTGTACGAAAGAAGGCTGACTGGGCCCTGAAGTGGATAGGAGACGAGGAAAATACGT 2309424 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 ||| | ||| | | || ||||| |||||||| ||||| ||||| || | ||| Sbjct 2309425 TTGGCGAGCGTGTAGTTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCGGGGGCCTTCG 2309484 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 || ||||||||| | | || | || ||||||||||| || | ||||||||| |||| Sbjct 2309485 CAGCAATTTTCTGGTTAAGGAAAAGAGGACTCATGCCGGGGCTAACTTTCTCCAATGAGC 2309544 Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA- 60152 |||| | |||||||| || || || ||||| || | ||| || ||| Sbjct 2309545 TGATCAGTAGAGACGAGGGTCTACACACCGACTTTGC-CTGTC---TTATGGTCAGCTAC 2309600 Query 60153 TTGGAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGAAG-T 60208 ||| || ||| |||| |||||| ||||| | | || ||| ||| | Sbjct 2309601 CTGGTCAATAAGCCTAGTGAGGAGCGCATTCACCAGATTATCGACAATGC-TGTTAAGAT 2309659 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||| | || ||||||||||| || || || || ||| | | ||| Sbjct 2309660 TGAGCAAGAGTTCCTGACGGAAGCGCTTCCTGTGAAGCTGATTGGGATGAA---TCAAGA 2309716 Query 60269 ---AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGG-----CCCAGTTTGGA 60320 |||| ||||||||| |||||||||| || | || ||| | || | || | Sbjct 2309717 CCTGATGAAACAGTACATTGAGTTTGTCGCAGATAGGCTGCTGGGAGAACTCA-TGTGCA 2309775 Query 60321 GAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAA 60380 | | | |||||| | | ||||| || |||| ||||||| ||| || |||| Sbjct 2309776 GTAAG----ATTTACAACAGCGAGAACCCCTTTGACTTCATGGAGAACATTTCTCTGGAG 2309831 Query 60381 GGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||||||||||||||||||| ||| || || || Sbjct 2309832 GGAAAGACCAACTTCTTTGAGAAGAAGGTGGGAGAGTA 2309869 >seq259 Length=546029 Score = 138 bits (152), Expect = 1e-27 Identities = 369/561 (66%), Gaps = 5/561 (1%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| || | ||| | |||| ||||| || | | ||||||||| Sbjct 378352 TTTCCCATCCAGTACCACGACATCTGGCACATGTACAAGAAGGCCGTAGCATCATTCTGG 378293 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | ||||| |||| ||| | ||| || | ||||||| | || ||| || || Sbjct 378292 ACAACGGAGGAAGTTGATCTCTCTAAGGACTTGGCGCATTGGGAGAGACTGAATGACAAC 378233 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 || | || |||||||| |||||||| ||||| || || ||||| || || || | Sbjct 378232 GAAAAACACTTCATCAAACACGTCCTGGCATTCTTTGCAGCTAGTGACGGTATAGTCAAT 378173 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 |||||| | | || || |||| || || ||| | | ||||| ||| ||||| Sbjct 378172 GAAAATCTGGTTGAGAGATTCACCAAAGAGGTGCAGGTGACTGAGGCAAGGTGCTTCTAT 378113 Query 59802 GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAG 59861 | | ||| || ||| ||||| || || | |||| ||| | ||||| | Sbjct 378112 GGCTTCCAGATAGCCATTGAGAACATCCATTCTGAAATGTACAGTCTCTTAATCGACACC 378053 Query 59862 TTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCA 59921 | || ||||| ||| | |||| | |||||||| ||||||| ||||| || Sbjct 378052 TACGTGAAGGAGCCGCATGAGAGAGAGCGTCTGTTCAGTGCCATTGAGACCATACCGTGT 377993 Query 59922 GTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT--GAGTCCTGGAGCATCATTTGCAC 59979 || || | || || || |||||| || |||||| ||| | || | | || ||| Sbjct 377992 GTACAAAAGAAGGCTGACTGGGCCCTGAAGTGGAGCGGAGACGAGGGG-AGCAGTTGGGG 377934 Query 59980 --AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGC 60037 | ||| | | || ||||| |||||||| ||||| ||||| || | ||| || Sbjct 377933 GGAGCGTGTAGTTGCGTTTGCCGCTGTGGAAGGGATCTTTTTCTCGGGGGCCTTCGCAGC 377874 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||||||||| | | || | || ||||||||||| || | ||||||||| |||||||| Sbjct 377873 AATTTTCTGGTTAAGGAAAAGAGGACTCATGCCGGGGCTAACTTTCTCCAATGAGCTGAT 377814 Query 60098 TTCCCGGGACGAGGGCCTCCA 60118 | |||||||| || || Sbjct 377813 CAGTAGAGACGAGGGTCTACA 377793 >seq201 Length=905327 Score = 111 bits (122), Expect = 2e-19 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 79326 GCCCGGG-CACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCA 79384 ||||||| ||||||||||| |||||||| ||| ||| ||| || || || || || Sbjct 244164 GCCCGGGACACTCGTGCGGACACATCAGCGTCCACTCCCCGTTCTCTTCCACGCGCTTCA 244105 Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 |||| ||||| |||||||||| ||| ||| ||||| || ||| |||||| | | Sbjct 244104 TGAACAGGTCAGGGATCCACATGGCGTAGAACAGGTCACGTGCGCGCTGCTCCTCCTTAC 244045 Query 79445 CCTGGTTCAGACGCAGC-TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || |||| || ||| || || || || | ||||||||||||||| ||||||| || Sbjct 244044 CCGTGTTCTTGCG-AGCATCCAGGAACTCGAAGATGTCGGCGTGCCATGGCTCCAAGTAC 243986 Query 79504 ATGGCGAACGAACCCTTGCGCT 79525 ||||| || | ||| ||||| Sbjct 243985 ATGGCAAAGGCACCAGGGCGCT 243964 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 || ||||| ||| | |||||||||||||| ||| || | || ||||| || ||| | Sbjct 243978 TTTGCCATGTACTTGGAGCCATGGCACGCCGACATCTTCGAGTTCCTGGATGCTCGCAAG 244037 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||| |||| | |||||| |||| || ||||| ||| ||| ||||||| || ||| Sbjct 244038 AACACGGGTAAGGAGGAGCAGCGCGCACGTGACCTGTTCTACGCCATGTGGATCCCTGAC 244097 Query 19613 CTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGC 19672 || |||||| || || || || ||| || ||| |||||||| |||||||| || Sbjct 244098 CTGTTCATGAAGCGCGTGGAAGAGAACGGGGAGTGGACGCTGATGTGTCCGCACGAGTGT 244157 Query 19673 CCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 || || || ||| || || |||| |||| | || ||||| Sbjct 244158 CCCGGGCTCGAAGACTGCTGGGGGGAGGAGTTCGAGAAGCTGTAC 244202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522071089120