Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq201 111 2e-19 seq115 102 9e-17 >seq201 Length=905327 Score = 111 bits (122), Expect = 2e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA-GCTGCGTCT 53628 || ||||| ||| | ||||| |||||||||||||| | ||||| || || ||| || Sbjct 243978 TTTGCCATGTACTTGGAGCCATGGCACGCCGACATCTTCGAGTTCCTGGATGCT-CGCAA 244036 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 ||| |||| | || ||| |||| ||||||||||| ||| || ||||||| || | Sbjct 244037 GAACACGGGTAAGGAGGAGCAGCGCGCACGTGACCTGTTCTAC-GCCATGTGGATCCCTG 244095 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||| | ||||| || ||| ||||||| |||||||| ||| |||||| Sbjct 244096 ACCTGTTCATGAAGCGCGTGGAAGAGAACGGGGAGTGGACGCTGATGTGTCCGCACGAGT 244155 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 | ||||| ||| | | || || |||||||| Sbjct 244156 GTCCCGGGCTCGAAGACTGCTGGGGGGAGGAGTT 244189 >seq115 Length=5728022 Score = 102 bits (112), Expect = 9e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||||||||| |||| ||| ||||| |||||||| || | | |||||| || || Sbjct 4318255 AGTGAAAATGTATCGAGGGCTGGCAGCGTCCTTGCCGCCGTGGATCCTCGTACCAAACTG 4318314 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | |||| || ||||||| ||||||| |||||||||||| || |||||||||| Sbjct 4318315 ACCAATGGGCTGCAGCAGGTTCACGTTGTTGCTGCCCACAAAGTTCTGCGCCAAGTTGA 4318373 Score = 100 bits (110), Expect = 3e-16 Identities = 361/559 (65%), Gaps = 23/559 (4%) Strand=Plus/Plus Query 158937 AACAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACC 158996 ||| | |||||| | || ||||| || | ||| || || || |||||||||||||| Sbjct 3214520 AACGACAAACTCCCTGACGCTGTACGACGTTCCTGTGGCTATAACAAAGTCCTCTGGCTT 3214579 Query 158997 GGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCG 159056 || || ||||| | ||||||||| | ||| || |||| ||| || |||||||| || Sbjct 3214580 CTCATGCTGTAGCATCAACCACATGGCTTTGACATAGTCCTTCGCATGTCCCCAGTCTCG 3214639 Query 159057 CTTGGCATCCATGTTCCCGAGCTCGATG-ACTTTTCCAGACTTTTTCCA-------CTCA 159108 || ||||||| |||||| || ||| |||| | ||| ||| | Sbjct 3214640 TTTAGCATCCAGGTTCCCCAGTGTAATGTGGTTTTGCTGAC-----CCAGCAGAATTTTG 3214694 Query 159109 GCCAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGG 159168 |||| || | |||||||| | || ||||| | | || | |||| ||| ||| Sbjct 3214695 GCCACCCCTCGGGTGATCTTCCTGGTGACAAAGGTTTCCCCCCTCCGTGGACTCTCGTGG 3214754 Query 159169 TTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATC 159228 || || || || ||| |||| || |||| || |||| || | ||| || | | Sbjct 3214755 TTGAAGAGGATACCGTTACAGGCAAACATGTCGTAGGCTTCCCTGTAGTTCACCACAACC 3214814 Query 159229 CAGTATCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCA 159288 ||||| | | || || | | || || || || || || |||||||| || Sbjct 3214815 CAGTAAGCGTACAGTTTAGCTGCTCCATAGGGTGACCTTGGGTAGAATGGTGTGGTTTCC 3214874 Query 159289 TTTTGAATTGG---TTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAAT 159345 | || ||| ||||| ||| |||||||| ||||||| | || ||||| || Sbjct 3214875 CTCTG---TGGCACCTCCTGCACCAAGCCAAACATCTCACTCGACGACGCTTGATAGAAC 3214931 Query 159346 TTGAATTTA-GAAACAAAATTGAATTG-ACGAATTGCTTCAAGAATTCGAAGGGTACCCA 159403 || || | |||| || ||| || || || || | |||||| || |||| Sbjct 3214932 CTGGTGGTATCAGACAAGCCTG--TTGCCCGTATGGCGTCCAAAATTCGTAGCACGCCCA 3214989 Query 159404 TGGCGTCGACGTTCGCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGG 159463 |||||||||| || ||||| || | | ||||| |||| |||||||| ||| | Sbjct 3214990 CACCGTCGACGTTGGCGGTGTATTCTGCGAGGTCAAACGAGACTTTCACGTGGCTCTGCG 3215049 Query 159464 CTCCGAGGTTATAGACCTC 159482 | | ||||| |||||||| Sbjct 3215050 CGGCCAGGTTGTAGACCTC 3215068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 357/557 (64%), Gaps = 21/557 (4%) Strand=Plus/Plus Query 124489 CGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCG 124548 ||| |||||| | || ||||| || | || ||| | || || || || || || || Sbjct 3214522 CGACAAACTCCCTGACGCTGTACGACGTTCCTGTGGCTATAACAAAGTCCTCTGGCTTCT 3214581 Query 124549 ACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCT 124608 ||||| | ||| | ||||||||||| ||| ||||||| || || |||||||| || | Sbjct 3214582 CATGCTGTAGCATCAACCACATGGCTTTGACATAGTCCTTCGCATGTCCCCAGTCTCGTT 3214641 Query 124609 TGGCATCCAGGTTTCCGAGCTCGAT-TGGCTTGGCCGTCTTGTTCCA-------CTCCGC 124660 | ||||||||||| || || || ||| || || || ||| | || Sbjct 3214642 TAGCATCCAGGTTCCCCAGTGTAATGTGGTTTTGC-----TGACCCAGCAGAATTTTGGC 3214696 Query 124661 CAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 || || | || ||||| | || ||||| || | || | ||||||||| Sbjct 3214697 CACCCCTCGGGTGATCTTCCTGGTGACAAAGGTTTCCCCCCTCCGTGGACTCTCGTGGTT 3214756 Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 ||| || || || |||| |||||||| |||| | || | |||||| | | ||| Sbjct 3214757 GAAGAGGATACCGTTACAGGCAAACATGTCGTAGGCTTCCCTGTAGTTCACCACAACCCA 3214816 Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATT 124840 || | | || || | | |||||||| | ||||||||||| ||| |||| | Sbjct 3214817 GTAAGCGTACAGTTTAGCTGCTCCATAGGGTGACCTTGGGTAGAATGGTGTGGTTTCCCT 3214876 Query 124841 TTGGGTAGGTTGCTGAATCTTCCCAAACATCTC---CGAAGTACCCGCCTGATAGAATTT 124897 || | | ||| | | ||||||||||| ||| | ||| |||||||| | Sbjct 3214877 CTGTGGCACCTCCTGCACCAAGCCAAACATCTCACTCGACG---ACGCTTGATAGAACCT 3214933 Query 124898 GAATTTTGAAATAGAATTC-GTTTGACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGG 124956 | | | | | || | ||| || || || ||||| || || || |||| Sbjct 3214934 G-GTGGTATCAGACAAGCCTGTTGCCCGTATGGCGTCCAAAATTCGTAGCACGCCCACAC 3214992 Query 124957 CGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGACTGGGCAC 125016 |||| || |||||||| || || | | ||||| || | |||||| ||| ||| || Sbjct 3214993 CGTCGACGTTGGCGGTGTATTCTGCGAGGTCAAACGAGACTTTCACGTGGCTCTGCGCGG 3215052 Query 125017 CTAGGTTGTACACCTCG 125033 | |||||||| |||||| Sbjct 3215053 CCAGGTTGTAGACCTCG 3215069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213277600400