Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq263 154 1e-32 >seq263 Length=525514 Score = 154 bits (170), Expect = 1e-32 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || ||||| ||||||||||||||||| |||||| Sbjct 160634 AGACCTGTGATGTGGGCTATCATGTAAGTCAGGAGTGAGTAGCTGGCGATGTTGAAGGGT 160693 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || |||||| |||| ||||| | |||||| ||||||||||| || ||||||| | | Sbjct 160694 ACGCCAAGCCCCGTGTCTCCCGAACGCTGGTACAGCTGACACGACAGTTCTCCGTTACAC 160753 Query 30062 ACGTAAAACT-GACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| |||| |||| | ||||||||| || || || ||||| Sbjct 160754 ACGTAGAACTGGACA-AAGGCGTGGCAGGGGGGCAGCGCCAT 160794 Score = 132 bits (146), Expect = 4e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 30227 TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30286 ||| |||| ||||| || ||||||||||||||||| || || || || || ||||| ||| Sbjct 162817 TCCTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCC 162876 Query 30287 TCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 30345 || || || |||| | || | |||||||| || |||||||| |||||||| ||||| Sbjct 162877 TCCTCGTAGTGGCTC-AGTCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCA 162935 Query 30346 GATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30405 ||| | |||| || || ||||| || ||| || || | || | ||| ||||| | Sbjct 162936 GATGTGTACCTTTTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAA 162995 Query 30406 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30465 |||||||| | || | |||| || || | ||| || || || ||||| ||||| || Sbjct 162996 GAGCTCCTCGGCTACCCCTCTCCAGAACACACGCTTTGTAGTCAGCAGGGGGAACTGCCC 163055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308429140616