Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq30 129 4e-25 seq116 102 5e-17 >seq30 Length=7729275 Score = 129 bits (142), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 7573002 AGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 7573061 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| ||||| || || | || ||| Sbjct 7573062 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 7573121 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| ||||||||| | ||| Sbjct 7573122 TTGTCTTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGT 7573180 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || |||||||| ||||||||| Sbjct 7573181 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573220 Score = 129 bits (142), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||||||| ||| |||||| || ||||| || || || || || || Sbjct 7573230 AGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 7573289 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| ||||| || || | || ||| Sbjct 7573290 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 7573349 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| ||||||||| | ||| Sbjct 7573350 TTGTCTTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGT 7573408 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || |||||||| ||||||||| Sbjct 7573409 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573448 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||||||| ||| |||||| || ||||| || || || || || || Sbjct 7573458 AGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 7573517 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| ||||| || || | || ||| Sbjct 7573518 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 7573577 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | |||||||| ||| || || | ||| Sbjct 7573578 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAACCTCGAGGGT 7573636 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| || | || |||||||| ||||||||| Sbjct 7573637 GATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 7573676 Score = 116 bits (128), Expect = 2e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||||||| ||| |||||| || ||||| || || || || || || Sbjct 7571862 AGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 7571921 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| ||||| || || | || ||| Sbjct 7571922 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 7571981 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || | | ||| |||||| ||||||||| | ||| Sbjct 7571982 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGTG 7572041 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || |||||||| ||||||||| Sbjct 7572042 ATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7572080 Score = 102 bits (112), Expect = 5e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||||| ||||| || ||||| || || || || || || Sbjct 7572090 AGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGA 7572149 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| ||||| || || | || ||| Sbjct 7572150 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 7572209 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || | | ||| |||||| ||| || || | ||| Sbjct 7572210 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACCTCGAGGGTG 7572269 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | ||||| || || ||||||||| Sbjct 7572270 ATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 7572308 >seq116 Length=4760417 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 3276329 AGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 3276270 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || || || || | |||||| ||||| || || | |||||| Sbjct 3276269 CCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCC 3276210 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| |||||| || | ||| Sbjct 3276209 TTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCCACCTCAAGGGT 3276151 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 3276150 GATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3276111 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 3276557 AGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 3276498 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || || || || | |||||| ||||| || || | |||||| Sbjct 3276497 CCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCC 3276438 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| ||||||||| | ||| Sbjct 3276437 TTGTCTTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCAAGGGT 3276379 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 3276378 GATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276340 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| ||| ||||| || ||||| || || || || || || Sbjct 3279193 AGACGCAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 3279134 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 3279133 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCC 3279074 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| |||||||| | ||| Sbjct 3279073 TTGTCTTGGATC-TTGGCCTTGACGTTTTCAATGGTGTCTGATGGTTCCACTTCAAGGGT 3279015 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| || |||||||| Sbjct 3279014 GATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCAT 3278976 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 3276785 AGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 3276726 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || || || || | |||||| ||||| || || | |||||| Sbjct 3276725 CCATCTTCCAACTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCC 3276666 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| |||||| ||| || || | ||| Sbjct 3276665 TTGTCTTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCAACCTCAAGGGT 3276607 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || ||||| || ||||||||| Sbjct 3276606 GATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3276567 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| || ||| |||||| || ||||| || || || || || || Sbjct 3276101 AGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 3276042 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || || || || | |||||| ||||| || || | |||||| Sbjct 3276041 CCATCTTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCC 3275982 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| ||||| ||| || || | ||| Sbjct 3275981 TTGTCTTGGATC-TTAGCCTTGACGTTCTCAATGGTGTCAGACGGCTCAACCTCAAGGGT 3275923 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || | || |||||||| |||||||| || Sbjct 3275922 GATGGTCTTCCCTGTGAGTGTCTTCACAAAGATCTGCATCTT 3275881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728073364734