Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq116 163 2e-35 >seq116 Length=4760417 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || ||||||||||| || || Sbjct 3276340 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACCCTTGAAGTGGAGCCATCA 3276399 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || ||||| ||||| || || Sbjct 3276400 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 3276459 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||||||| | ||| | ||||| |||||| Sbjct 3276460 CAGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 3276519 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||||| ||||| |||| |||||||| Sbjct 3276520 ATCCAGAAGGAGTCTACCCTCCACTTGGTTCTGCGTCTGCGTGGTGGCAT 3276569 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || |||||||||||||| || Sbjct 3278976 ATGCAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACCCTTGAAGTGGAACCATCA 3279035 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || ||||| || || || || Sbjct 3279036 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3279095 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||||||| | ||| | ||||| |||||| Sbjct 3279096 CAGCGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAAC 3279155 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || |||||| ||||| |||| |||||||| Sbjct 3279156 ATCCAGAAGGAATCCACCCTCCACTTGGTTCTGCGTCTGCGTGGTGGCAT 3279205 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || |||||||| || || || || Sbjct 3279203 CATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTTGAGCCATC 3279262 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || |||||||| || ||||| ||||||||||| Sbjct 3279263 TGACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCACCCGATCA 3279322 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || ||||||| | ||| | || || ||||| Sbjct 3279323 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 3279382 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||| || ||| | ||| | || ||||| |||| ||||| Sbjct 3279383 CATCCAGAAGGAATCCACCCTTCATCTTGTGCTGCGTCTGCGTGGTGG 3279430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916236280960