Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq263 96.9 3e-15 >seq263 Length=525514 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || || | ||| ||||||| Sbjct 162823 TATTCTGCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCCTCCT-- 162880 Query 6959 CGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 || ||| | || ||||||||||| || |||| || |||| || |||||||| | Sbjct 162881 CGTAGTGGCTCAGTCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCAGATGT 162940 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCT 7076 ||| | ||||| |||||| || || |||| || ||||| | |||| Sbjct 162941 GTACCTTTTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAAGAGCT 163000 Query 7077 CCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||||| | || || ||||| ||||||| || || |||||||| || || Sbjct 163001 CCTCGGCTACCCCTCTCCAGAACACACGCTTTGTAGTCAGCAGGGGGAA 163049 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || |||||||| || || ||||||| ||||| || || | ||||||||| | ||| Sbjct 163049 TTCCCCCTGCTGACTACAAAGCGTGTGTTCTGGAGAGGGGTAGCCGAGGAGCTCTTATGG 162990 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || || |||| || || |||||| ||||| | ||| | |||||||| Sbjct 162989 TTTGTCCGGGGCTGTACCAATGGCAAGGAACTCTCCGACAAAAAGGTACACATCTGGGAT 162930 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGGAGGGCG 34397 || |||| || |||| || ||||||||||| || | ||| || ||||||| | Sbjct 162929 GCCAACGGCTCCAGAGATTTCCTGGACAAGCGTGGACTGAGCCACTACG--AGGAGGGGG 162872 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || | || || || || || ||||||||||| || ||||| || || || Sbjct 162871 ACCTTGGTCCTGTATATGGCTTCCAGTGGAGGCATTTTGGTGCAGAATA 162823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260169894560