Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq30 86.0 4e-12 >seq30 Length=7729275 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || ||||| || | || |||||||| || || |||| Sbjct 7573126 GACAAGGAAGGCATCCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAA 7573067 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | |||| || ||||||||||| || |||||||| | || |||||| || Sbjct 7573066 GATGGCCGCACCCTGTCTGACTACAACATCCAGAAGGAGAGCACCCTCCACTTGGTTCTG 7573007 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 7573006 CGTCTGCGTGGTGGC 7572992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860673844946