Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq30 188 2e-42 seq116 176 1e-38 seq6 89.7 1e-12 >seq30 Length=7729275 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||||||||| |||||||| || || | ||||| | |||||| Sbjct 7572552 AGGACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 7572611 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || || || ||||| || || | ||||||||||| Sbjct 7572612 TCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 7572671 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 7572672 TGGATCTTGGCCTTGACGTTTTCGATTGTGTCGGATGGCTCAACCTCGAGGGTGATGGTC 7572731 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 7572732 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 7572763 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 7572324 AGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 7572383 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || || || ||||| || || | ||||||||||| Sbjct 7572384 TCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 7572443 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 7572444 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACCTCGAGGGTGATGGTC 7572503 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || | |||||| Sbjct 7572504 TTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572535 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||||||||| |||||||| || || | ||||| | |||||| Sbjct 7572780 AGAACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 7572839 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| ||||||||||| || || || ||||| || || | ||||||||||| Sbjct 7572840 TCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 7572899 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| |||||||| ||||||||||| ||||| ||| Sbjct 7572900 TGGATCTTGGCCTTGACATTCTCGATTGTGTCAGACGGCTCAACCTCGAGGGTGATGGTC 7572959 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | |||||| Sbjct 7572960 TTGCCTGTCAGGGTTTTGACAAAGATCTGCAT 7572991 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || |||||||| || || | ||||| | ||||||||||||||| Sbjct 7571877 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 7571936 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 |||||||||||||| || || || ||||| || || | ||||||||||| |||||||| Sbjct 7571937 TTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 7571996 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| || || || || || ||||| ||||| || ||| Sbjct 7571997 GCCTTGACATTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGTGATGGTCTTGCCTGTG 7572056 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 7572057 AGGGTCTTCACAAAGATCTGCAT 7572079 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || |||||||| || || | ||||| | ||||||||||||||| Sbjct 7573473 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 7573532 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || || || ||||| || || | ||||||||||| |||||||| Sbjct 7573533 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 7573592 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| ||||| ||||| || ||||||||||| ||||| ||||| || || Sbjct 7573593 GCCTTGACGTTCTCGATTGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTTACCAGTC 7573652 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 7573653 AGGGTCTTCACAAAGATCTGCAT 7573675 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || |||||||| || || | ||||| | ||||||||||||||| Sbjct 7573245 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 7573304 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || || || ||||| || || | ||||||||||| |||||||| Sbjct 7573305 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 7573364 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| |||||||| || || || || || ||||| ||||| || ||| Sbjct 7573365 GCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGTGATGGTCTTGCCTGTG 7573424 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 7573425 AGGGTCTTCACAAAGATCTGCAT 7573447 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | || || ||| || || |||||||| || || | ||||| Sbjct 7572086 ACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGACAGGGT 7572145 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||||||||||||||| || || || ||||| || || | || Sbjct 7572146 GCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCC 7572205 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| |||||||| || || ||||| |||||||| || ||||||||||| Sbjct 7572206 TTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACCTCGAG 7572265 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || || || || || | |||||| Sbjct 7572266 GGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572307 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||| ||| || |||||||| || || | ||||| | |||||| Sbjct 7573008 AGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 7573067 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || ||||| || || | ||||||||||| Sbjct 7573068 TCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 7573127 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| |||||||| || || || || || ||||| ||| Sbjct 7573128 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCACTTCTAGGGTGATGGTC 7573187 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 7573188 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7573219 >seq116 Length=4760417 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| ||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3276095 AGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3276036 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || || ||||| || || | || |||||||| Sbjct 3276035 TCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 3275976 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||||| |||||||| || ||||| ||| Sbjct 3275975 TGGATCTTAGCCTTGACGTTCTCAATGGTGTCAGACGGCTCAACCTCAAGGGTGATGGTC 3275916 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 3275915 TTCCCTGTGAGTGTCTTCACAAAGATCTGCATCTT 3275881 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| || || |||||||| || || | ||||| | |||||| Sbjct 3279415 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 3279356 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || || || || |||| || |||||||| Sbjct 3279355 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGTGGAATGCCCTCCTTGTCT 3279296 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||||||||||| |||||||| |||||||| ||| Sbjct 3279295 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAACCTCAAGAGTGATGGTC 3279236 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3279235 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3279204 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 3277007 AGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3276948 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || || ||||| || || | || |||||||| Sbjct 3276947 TCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 3276888 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||||| |||||||| |||||||| ||| Sbjct 3276887 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACCTCAAGAGTGATGGTC 3276828 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3276827 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276796 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| ||||| || || |||||||| || || | ||||| | |||||| Sbjct 3277235 AGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3277176 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || || ||||| || || | || |||||||| Sbjct 3277175 TCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 3277116 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||||| |||||||| || ||||| ||| Sbjct 3277115 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACCTCAAGGGTGATGGTC 3277056 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3277055 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3277024 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | |||||| Sbjct 3276323 AGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3276264 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| || || | || |||||||| Sbjct 3276263 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 3276204 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || || ||||| || ||||| ||| Sbjct 3276203 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGATGGCTCCACCTCAAGGGTGATGGTC 3276144 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 3276143 TTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 3276112 >seq6 Length=9188263 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 2515490 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 2515431 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||||| || |||||||| || | || ||||||||||| Sbjct 2515430 TCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 2515387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146089049270