Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq30 86.0 5e-12 >seq30 Length=7729275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || || || || | || || || | || || Sbjct 7573466 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 7573525 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| | ||| | || || ||||| Sbjct 7573526 CAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 7573585 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| || | | || ||| | ||| || || | ||||| | || Sbjct 7573586 GATCTTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAACCTCGAGGGTGATGGTCTT 7573645 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 7573646 ACCAGTCAGGGTCTTCACAAAGATCTGCAT 7573675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| |||||| || || || || || | || || || | || ||| Sbjct 7572783 ACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCA 7572842 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || |||||||||||||| | ||| | || || ||||| | Sbjct 7572843 AGCTGCTTTCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 7572902 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || ||| || || | ||||| | || Sbjct 7572903 ATCTTGGCCTTGACATTCTCGATTGTGTCAGACGGCTCAACCTCGAGGGTGATGGTCTTG 7572962 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| |||||||| ||||| Sbjct 7572963 CCTGTCAGGGTTTTGACAAAGATCTGCAT 7572991 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| ||||||||| || ||||| || || || || || || || | || || || | Sbjct 7572093 CGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 7572152 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || || |||||||||||||| | ||| | || || ||| Sbjct 7572153 TCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTG 7572212 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || |||| | | | || || | ||| || || | ||||| Sbjct 7572213 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAACCTCGAGGGTGATG 7572272 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| ||||| || ||||| ||||| Sbjct 7572273 GTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCAT 7572307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543516435374