Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq30 107 1e-18 >seq30 Length=7729275 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||| ||||| ||||| | | Sbjct 7572535 ATGCAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCA 7572476 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| ||||| | || ||||| || Sbjct 7572475 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7572416 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || |||||||| | ||||| | || |||||| Sbjct 7572415 CAGCGTCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7572356 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 7572355 ATCCAGAAAGAGTCCAC 7572339 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || ||||| || | | Sbjct 7573447 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCA 7573388 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| ||||| | || ||||| || Sbjct 7573387 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7573328 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 7573327 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7573268 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 7573267 ATCCAGAAGGAGTCCACCCTCCATTTGGT 7573239 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| ||||| | | Sbjct 7572763 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCC 7572704 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| ||||| | || ||||| || Sbjct 7572703 GACACAATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7572644 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||||||| | ||||| | || |||||| Sbjct 7572643 CAGCGTCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7572584 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 7572583 ATCCAGAAAGAGTCCAC 7572567 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| ||||| | | Sbjct 7573675 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCATCC 7573616 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || ||||| || Sbjct 7573615 GACACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7573556 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 7573555 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7573496 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 7573495 ATCCAGAAGGAGTCCACCCTCCATTTGGT 7573467 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || ||||| || | | Sbjct 7573219 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCA 7573160 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| ||||| | || ||||| || Sbjct 7573159 GACACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 7573100 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 7573099 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 7573040 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || ||| ||| | || || ||| Sbjct 7573039 ATCCAGAAGGAGAGCACCCTCCACTTGGTT 7573010 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| ||||| ||||| | | Sbjct 7572991 ATGCAGATCTTTGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCGTCT 7572932 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| ||||| | || ||||| || Sbjct 7572931 GACACAATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCA 7572873 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || ||||| | ||||| | || ||||| Sbjct 7572872 GCAGCGTCTCATCTTCGCAGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGACTACAA 7572813 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||||||||| | || || ||| Sbjct 7572812 CATCCAGAAAGAGTCCACTCTCCACTTGGTT 7572782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007960442184