Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq263 136 3e-27 >seq263 Length=525514 Score = 136 bits (150), Expect = 3e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || ||||| ||||||||||||||||| ||||| Sbjct 160634 AGACCTGTGATGTGGGCTATCATGTAAGTCAGGAGTGAGTAGCTGGCGATGTTGAAGGGT 160693 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || |||||| |||| || || | |||||| ||||| ||||| || ||||||| | | Sbjct 160694 ACGCCAAGCCCCGTGTCTCCCGAACGCTGGTACAGCTGACACGACAGTTCTCCGTTACAC 160753 Query 29834 ACGTAAAACT-GACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||||| |||| |||| | ||| ||||| || || || ||||| Sbjct 160754 ACGTAGAACTGGACA-AAGGCGTGGCAGGGGGGCAGCGCCAT 160794 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075 ||||||||||||||||| || || || || || ||||| ||||| || || |||| | Sbjct 162835 AAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCCTCCTCGTAGTGGCTC-AG 162893 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 || | |||||||| || |||||||| |||||||| |||||||| | |||| || || Sbjct 162894 TCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCAGATGTGTACCTTTTTGTC 162953 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195 |||||| || ||| || || | || | ||| ||||| | |||||||| | || | Sbjct 162954 GGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAAGAGCTCCTCGGCTACCCC 163013 Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 30237 |||| || || | ||| || || || ||||| ||||| || Sbjct 163014 TCTCCAGAACACACGCTTTGTAGTCAGCAGGGGGAACTGCCC 163055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161229854628