Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq263 145 6e-30 >seq263 Length=525514 Score = 145 bits (160), Expect = 6e-30 Identities = 131/162 (81%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || ||||| ||||||||||||||||| |||||| Sbjct 160634 AGACCTGTGATGTGGGCTATCATGTAAGTCAGGAGTGAGTAGCTGGCGATGTTGAAGGGT 160693 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || |||||| |||| ||||| | |||||| ||||||||||| || ||||| | | Sbjct 160694 ACGCCAAGCCCCGTGTCTCCCGAACGCTGGTACAGCTGACACGACAGTTCTCCGTTACAC 160753 Query 27328 ACGTAAAACT-GACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| |||| |||| | ||||||||| || || || ||||| Sbjct 160754 ACGTAGAACTGGACA-AAGGCGTGGCAGGGGGGCAGCGCCAT 160794 Score = 132 bits (146), Expect = 4e-26 Identities = 175/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 27493 TCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCC 27552 ||| |||| ||||| || ||||||||||| ||||| || || || || || ||||| ||| Sbjct 162817 TCCTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATATACAGGACCAAGGTCCCCC 162876 Query 27553 TCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCA 27611 || || || |||| | || | |||||||| || |||||||| |||||||| ||||| Sbjct 162877 TCCTCGTAGTGGCTC-AGTCCACGCTTGTCCAGGAAATCTCTGGAGCCGTTGGCATCCCA 162935 Query 27612 GATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 27671 ||| | |||| || |||||||| || ||| || || | || | ||| ||||| | Sbjct 162936 GATGTGTACCTTTTTGTCGGAGAGTTCCTTGCCATTGGTACAGCCCCGGACAAACCATAA 162995 Query 27672 CAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCC 27731 |||||||| | || | |||| || || | ||| || || || ||||| ||||| || Sbjct 162996 GAGCTCCTCGGCTACCCCTCTCCAGAACACACGCTTTGTAGTCAGCAGGGGGAACTGCCC 163055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505407659138