Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq70 107 2e-18 >seq70 Length=4241797 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 161596 CTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGT 161655 |||||| || || || ||||| ||||| | ||||| || || |||| ||||||||||| Sbjct 4022648 CTACTCCTGCCGGGCGGGCGCATGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACCGT 4022707 Query 161656 AGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGAC 161715 || |||||||||||||||||||||||||| || ||||||| | || | | | ||||| Sbjct 4022708 GGATCAAAGCGACCAGTCCTTCCTGGACGACGATCAAATCGCAGCAGGGTACGTCCTGAC 4022767 Query 161716 TTGT 161719 ||| Sbjct 4022768 CTGT 4022771 Score = 105 bits (116), Expect = 7e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 161586 TGGACATCAACTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCT 161645 ||||| || |||||| || || || ||||| ||||| | ||||| || || |||| | Sbjct 4032340 TGGACCTCCCCTACTCCTGCCGAGCGGGCGCGTGTTCCACCTGCGCCGGTAAGATCGTGT 4032281 Query 161646 CTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCG 161696 |||||||||| || || |||||||||||||||||||| || |||||||||| Sbjct 4032280 CTGGCACCGTGGATCAGAGCGACCAGTCCTTCCTGGATGACGACCAAATCG 4032230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 161582 GGTGTGGACATCAACTACTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTC 161641 || ||||| || |||||| || || || ||||| || | | ||||| || || || Sbjct 4027331 GGCGTGGAACTCCCCTACTCCTGCCGGGCGGGCGCATGCACCACCTGCGCCGGTAAGATC 4027390 Query 161642 GTCTCTGGCACCGTAGACCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCT 161701 || ||||||||||| || || ||||||||| |||||||||| | |||||||| | | Sbjct 4027391 GTGTCTGGCACCGTGGATCAGAGCGACCAGACCTTCCTGGATGCGGACCAAATGGCAGCA 4027450 Query 161702 GGTTTCATTCTGACTTGTGTTTCTTATCCCACGAGCGA 161739 || ||| | ||||| || || | || || || || || Sbjct 4027451 GGGTTCGTCCTGACCTGCGTGGCCTACCCAACCAGTGA 4027488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557651625669360