Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq70 122 1e-22 >seq70 Length=4241797 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 167489 CTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGT 167548 |||||| ||||| || ||||| ||||| | ||||| || || || | ||||||||||| Sbjct 4022648 CTACTCCTGCCGGGCGGGCGCATGTTCCACCTGCGCCGGTAAGATCGTGTCTGGCACCGT 4022707 Query 167549 AGATCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCAC 167608 ||||||||||| || |||||||||||||| |||||||| || | ||| | | | || || Sbjct 4022708 GGATCAAAGCGACCAGTCCTTCCTGGACGACGATCAAATCGCAGCAGGGTACGTCCTGAC 4022767 Query 167609 CTGTGTGTCCTATCCAACCAGCGAC 167633 |||| || |||| |||| || ||| Sbjct 4022768 CTGTATGGCCTACCCAAGAAGTGAC 4022792 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 167479 TGGACATCAACTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCT 167538 ||||| || |||||| ||||| || ||||| ||||| | ||||| || || || | | Sbjct 4032340 TGGACCTCCCCTACTCCTGCCGAGCGGGCGCGTGTTCCACCTGCGCCGGTAAGATCGTGT 4032281 Query 167539 CTGGCACCGTAGATCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTT 167598 |||||||||| ||||| ||||| || ||||||||||| || || ||||| || | ||| | Sbjct 4032280 CTGGCACCGTGGATCAGAGCGACCAGTCCTTCCTGGATGACGACCAAATCGCAGCAGGGT 4032221 Query 167599 TCCTTCTCACCTGTGTGTCCTATCCAACCAGCGAC 167633 | | || ||||| ||| || |||||||||||| Sbjct 4032220 ACGTCCTGACCTGCGTGGCCCGCCCAACCAGCGAC 4032186 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 167475 GGTGTGGACATCAACTACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTC 167534 || ||||| || |||||| ||||| || ||||| || | | ||||| || || || Sbjct 4027331 GGCGTGGAACTCCCCTACTCCTGCCGGGCGGGCGCATGCACCACCTGCGCCGGTAAGATC 4027390 Query 167535 ATCTCTGGCACCGTAGATCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAA 167594 | ||||||||||| ||||| ||||| || |||||||||| | || ||||| || | | Sbjct 4027391 GTGTCTGGCACCGTGGATCAGAGCGACCAGACCTTCCTGGATGCGGACCAAATGGCAGCA 4027450 Query 167595 GGTTTCCTTCTCACCTGTGTGTCCTATCCAACCAGCGAC 167633 || ||| | || ||||| ||| |||| |||||||| ||| Sbjct 4027451 GGGTTCGTCCTGACCTGCGTGGCCTACCCAACCAGTGAC 4027489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592195453812960