Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq253 84.2 3e-11 >seq253 Length=636578 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 9070 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9129 |||||||| || | ||||||||| |||| ||| ||||| || || || || ||| Sbjct 299078 TCCGGCATCAGCGGATGCCAGTGGTACAGATGGTTGAACTCCACGAAGATGCGGTTCTGG 299019 Query 9130 TACTGGAACGAAGTACCA-AAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188 ||||||||| || | | |||||||| || || | | | ||| | ||| | |||||| Sbjct 299018 TACTGGAACTG-GTCCGAGAAGAGCAGCTCAGGGTCCCAGAACAGGTCAAAGTTGTAGCC 298960 Query 9189 GCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 ||| || ||||| ||||| | | | ||| ||||||||||| || || Sbjct 298959 GCTCAGGTGCTGCACGTACTCGTTAATGATGATGTTGATGGTCTCACC 298912 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || || | ||| || | || |||||||| ||||| |||||||| || |||| Sbjct 300301 TCTTCACCATGCGGAAGCCGGCCTCCCCGCCGAACGTGCTCGGCTTCCACCACTGCGGGC 300242 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||| | ||| | || ||||| || | ||||||||| | |||| ||||| ||| Sbjct 300241 TGCACAGCGGGTTGGACAGCAGGCCCTTCACGGAGAACGGGCCGCCCATCTCGATGATGG 300182 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| | | || | | |||| |||| ||||||| | || ||||||||||| Sbjct 300181 TCTCGCTGGTGACGCTGCCGGGAGCCGGCTGCTCCACCATCAGCCCCACGTACAGCTCCA 300122 Query 8529 CAGCCTCGACGTCTCCGTA 8547 | || || ||||| ||||| Sbjct 300121 CTGCGTCAACGTCGCCGTA 300103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716873233537920