Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq116 150 4e-31 seq30 147 5e-30 >seq116 Length=4760417 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || |||||||| |||||||| |||||| Sbjct 3276115 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAGCCATCAGAC 3276174 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 3276175 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 3276234 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || |||| || ||| || Sbjct 3276235 CGTCTCATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 3276294 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 3276295 CAGAAGGAGTCTACCCTCCA-CTTGGTT 3276321 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||| || || |||||||| ||||| || || ||| Sbjct 3275887 CAGATCTTTGTGAAGACACTCACAGGGAAGACCATCACCCTTGAGGTTGAGCCGTCTGAC 3275946 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 3275947 ACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3276006 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | |||||||| | || || |||| || ||| || Sbjct 3276007 CGTCTCATCTTCGCTGGGAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 3276066 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 3276067 CAGAAGGAGTCCACCCTTCATCTTGT 3276092 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || |||||||| ||||| || |||||| Sbjct 3276571 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCATCAGAC 3276630 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 3276631 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 3276690 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | |||||||| | || || |||| || ||| || Sbjct 3276691 CGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 3276750 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 3276751 CAGAAGGAGTCTACCCTCCA-CTTGGTT 3276777 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || |||||||| || |||||| |||||| Sbjct 3278979 CAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACCCTTGAAGTGGAACCATCAGAC 3279038 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 3279039 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3279098 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | |||||||| | || || |||| || ||| || Sbjct 3279099 CGTCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 3279158 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 3279159 CAGAAGGAATCCACCCTCCA-CTTGGTT 3279185 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || |||||||| || ||||| |||||| Sbjct 3276343 CAGATCTTCGTGAAGACCCTGACAGGGAAGACCATCACCCTTGAAGTGGAGCCATCAGAC 3276402 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 3276403 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 3276462 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | |||||||| | || || |||| || ||| || Sbjct 3276463 CGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 3276522 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 3276523 CAGAAGGAGTCTACCCTCCA-CTTGGTT 3276549 >seq30 Length=7729275 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || ||||| || || |||||||||||||| || || ||| Sbjct 7572988 CAGATCTTTGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCGTCTGAC 7572929 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7572928 ACAATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572869 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| |||||||| | || || | || || ||| || Sbjct 7572868 CGTCTCATCTTCGCAGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGACTACAACATC 7572809 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| || || || || |||| || Sbjct 7572808 CAGAAAGAGTCCACTCTCCA-CTTGGTT 7572782 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || ||||| || || |||||||||||||| || |||||| Sbjct 7572532 CAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCAGAC 7572473 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7572472 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 7572412 CGTCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7572353 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 7572352 CAGAAAGAGTCCACCCTCCA-CTTG 7572329 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||| || || |||||||| || ||||| |||||| Sbjct 7573444 CAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCAGAC 7573385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7573384 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7573325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || | || || ||| || Sbjct 7573324 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7573265 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 7573264 CAGAAGGAGTCCACCCTCCAT 7573244 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||| || || |||||||| || ||||| |||||| Sbjct 7572076 CAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCAGAC 7572017 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7572016 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7571957 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 7571956 CGTCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7571897 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 7571896 CAGAAGGAGTCCACCCTCCAT 7571876 Score = 138 bits (152), Expect = 3e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || ||||| || || |||||||||||||| || |||||| Sbjct 7572304 CAGATCTTCGTCAAAACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCAGAC 7572245 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7572244 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572185 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | || || ||| || Sbjct 7572184 CGTCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATC 7572125 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 7572124 CAGAAGGAA 7572116 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||||||||| || || ||| Sbjct 7573672 CAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 7573613 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7573612 ACAATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7573553 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || | || || ||| || Sbjct 7573552 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7573493 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 7573492 CAGAAGGAGTCCACCCTCCAT 7573472 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||| || || |||||||||||||| || || ||| Sbjct 7572760 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCCGAC 7572701 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7572700 ACAATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7572641 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 7572640 CGTCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7572581 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 7572580 CAGAAAGAGTCCACTCTCCA-CTTG 7572557 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||| || || |||||||| || ||||| |||||| Sbjct 7573216 CAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTAGAAGTGGAGCCATCAGAC 7573157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 7573156 ACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAG 7573097 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | || || | || || ||| || Sbjct 7573096 CGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 7573037 Query 178104 CAAAAAGA 178111 || || || Sbjct 7573036 CAGAAGGA 7573029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725061723212