Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Branchiostoma_20floridae_20[refseq_20GCF_5F000003815.1_202009-05-01] 398 sequences; 521,895,125 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq30 129 5e-25 seq116 120 3e-22 >seq30 Length=7729275 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||| || ||| ||||||||| ||||| ||||| || Sbjct 7573448 GCCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 7573507 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 7573508 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 7573567 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | |||||| | ||| || Sbjct 7573568 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGATGGCTCAAC 7573627 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || ||||| ||||| ||||| || || ||||||||| Sbjct 7573628 CTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 7573676 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||||| ||||| ||| || ||||| |||||||| ||||| ||||| || Sbjct 7572080 GCCACCACGCAGACGTAGCACCAAATGGAGGGTGCTTTCCTTCTGGATGTTGTAGTCAGA 7572139 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 7572140 CAGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGG 7572199 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | ||||| | ||| || Sbjct 7572200 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAAC 7572259 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| || || ||||| ||||||||| Sbjct 7572260 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 7572308 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || |||||||||||||| ||||| ||||| || Sbjct 7572992 GCCACCACGCAGACGCAGAACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGA 7573051 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 7573052 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 7573111 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | || | || || | ||| | | ||||| | ||||| Sbjct 7573112 GATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCA 7573170 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || || ||||||||| Sbjct 7573171 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573220 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||| || ||| ||||||||| ||||| ||||| || Sbjct 7573220 GCCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 7573279 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 7573280 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGGGG 7573339 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | || | || || | ||| | | ||||| | ||||| Sbjct 7573340 GATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGATGGCTCCA 7573398 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || || ||||| || || ||||||||| Sbjct 7573399 CTTCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7573448 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| ||||||||| ||||| ||||| || Sbjct 7571853 CCACCACGCAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7571912 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 7571913 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGGG 7571972 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||| ||| || ||| | | ||||| | |||||| Sbjct 7571973 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCCACT 7572032 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || ||||| || || ||||||||| Sbjct 7572033 TCTAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATG 7572080 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || ||| ||| ||||| ||||| ||||| || Sbjct 7572536 GCCACCACGCAGACGCAGGACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 7572595 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| || || || || ||||| ||||| | ||| Sbjct 7572596 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGG 7572655 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||| | || | || || | ||| | | |||||| | ||| | Sbjct 7572656 GATGCCTTCCTTGT-CTTGGATCTTGGCCTTGACGTTTTCGATTGTGTCGGATGGCTCAA 7572714 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 7572715 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 7572764 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || ||| ||| ||||| ||||| ||||| || Sbjct 7572308 GCCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 7572367 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 7572368 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCTGGGGG 7572427 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | ||||| | ||| || Sbjct 7572428 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGCTCAAC 7572487 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| || || ||||| ||||||||| Sbjct 7572488 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTTTTGACGAAGATCTGCATG 7572536 >seq116 Length=4760417 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 3276338 CCACCACGCAGACGCAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 3276279 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| || || ||||| ||||| | || Sbjct 3276278 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 3276219 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || ||||||||| ||| || ||| |||| | || ||||| | ||| Sbjct 3276218 ATGCCCTCCTTGTCTTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCTGATGGCTC 3276163 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 3276162 CACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3276111 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| |||||||| ||||| ||||| || Sbjct 3279430 CCACCACGCAGACGCAGCACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3279371 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| || || ||||| || || | ||| Sbjct 3279370 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGTGGA 3279311 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | ||||| | ||| || Sbjct 3279310 ATGCCCTCCTTGT-CTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCAGATGGCTCAAC 3279252 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 3279251 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATG 3279203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301700037600